Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq8137 107 2e-18
seq32411 96.9 3e-15
>seq8137
Length=98436
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || || || || | ||| ||||| | || ||||| ||
Sbjct 11191 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 11132
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 11131 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 11072
Query 4692 AC 4693
||
Sbjct 11071 AC 11070
Score = 105 bits (116), Expect = 6e-18
Identities = 102/130 (78%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
||| |||||| || | |||||| ||||| || || ||||||||||||||||| |||| ||
Sbjct 6440 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 6381
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||||| |||||||| | ||| || | || || || |||||||| || | || || |
Sbjct 6380 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGCGGAAGGTCCTTTG 6321
Query 5041 TTAAATCAAC 5050
||||||||
Sbjct 6320 ACAAATCAAC 6311
>seq32411
Length=23632
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| || ||||| || || || || |||||||| |||||||||||||| || |||
Sbjct 22828 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 22887
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924
||||| || || || || || | ||||||||| | ||| ||||| | || |||
Sbjct 22888 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCTTGACTAAA 22940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426727790234723
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |