Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq10553 168 1e-36
seq48794 96.9 5e-15
>seq10553
Length=23981
Score = 168 bits (186), Expect = 1e-36
Identities = 223/308 (72%), Gaps = 1/308 (0%)
Strand=Plus/Plus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| |||| || ||||| || || |||||| | |||| || ||| | | ||
Sbjct 18484 GGAAAGCGGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 18543
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | || ||||| | ||| || |||||||| |||||||||||| | ||||
Sbjct 18544 TATTGATTATTTCAAAGCCCACTTTTCCTCCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18603
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| | || |||| || ||||| ||||||||||| || || | ||| | ||
Sbjct 18604 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCTCCAATCTCCACCATCG 18663
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
||||||| |||||||| || || |||||||| || | | || | |||||||||||
Sbjct 18664 TCTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 18723
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587
||| || | |||||| ||||| | ||||| || || || || |||||||||||
Sbjct 18724 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 18783
Query 8588 TTATTAAT 8595
|||| |||
Sbjct 18784 TTATCAAT 18791
Score = 161 bits (178), Expect = 1e-34
Identities = 179/239 (75%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 9247 AGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACA 9306
|||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| |
Sbjct 20492 AGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGATG 20551
Query 9307 TCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACC 9366
|| || |||| |||||||||||| ||||| || ||||| |||||||| | || || |||
Sbjct 20552 TCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTGGCATACATCATCAAGCCTGGGACC 20611
Query 9367 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAG 9426
| ||||| |||| || || |||| | ||| || ||| || | | ||||| |||
Sbjct 20612 AAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAG 20671
Query 9427 ATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485
||||| | |||| ||| || |||| || ||||||||||| ||||||||||||||
Sbjct 20672 ATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 20730
>seq48794
Length=17621
Score = 96.9 bits (106), Expect = 5e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432
|||||||||| || ||||| ||||||||| | |||||||||||| ||| | | || |
Sbjct 2534 CTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGCAGCC 2475
Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492
| || | ||| || ||||| |||| ||| | ||||| || || || || | |||||
Sbjct 2474 CCTTCAAGGAAAATGGAGCTCCCATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 2415
Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550
|||| || || | || || || | || | ||||| ||| || | |||||| || ||
Sbjct 2414 GGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAG 2357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716322734882240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |