Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq10553 168 1e-36 seq48794 96.9 5e-15 >seq10553 Length=23981 Score = 168 bits (186), Expect = 1e-36 Identities = 223/308 (72%), Gaps = 1/308 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| || || |||||| | |||| || ||| | | || Sbjct 18484 GGAAAGCGGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 18543 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 18544 TATTGATTATTTCAAAGCCCACTTTTCCTCCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18603 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || ||||| ||||||||||| || || | ||| | || Sbjct 18604 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCTCCAATCTCCACCATCG 18663 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 ||||||| |||||||| || || |||||||| || | | || | ||||||||||| Sbjct 18664 TCTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 18723 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 18724 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 18783 Query 8588 TTATTAAT 8595 |||| ||| Sbjct 18784 TTATCAAT 18791 Score = 161 bits (178), Expect = 1e-34 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9247 AGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACA 9306 |||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| | Sbjct 20492 AGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGATG 20551 Query 9307 TCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACC 9366 || || |||| |||||||||||| ||||| || ||||| |||||||| | || || ||| Sbjct 20552 TCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTGGCATACATCATCAAGCCTGGGACC 20611 Query 9367 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAG 9426 | ||||| |||| || || |||| | ||| || ||| || | | ||||| ||| Sbjct 20612 AAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAG 20671 Query 9427 ATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 ||||| | |||| ||| || |||| || ||||||||||| |||||||||||||| Sbjct 20672 ATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 20730 >seq48794 Length=17621 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||||||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 2534 CTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGCAGCC 2475 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || | ||| || ||||| |||| ||| | ||||| || || || || | ||||| Sbjct 2474 CCTTCAAGGAAAATGGAGCTCCCATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 2415 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| || || | || || || | || | ||||| ||| || | |||||| || || Sbjct 2414 GGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAG 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716322734882240