Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq135 127 1e-24 seq9 93.3 3e-14 >seq135 Length=2034267 Score = 127 bits (140), Expect = 1e-24 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| |||| |||||| ||| |||||||||| |||||||||||||| Sbjct 1932386 CTTGAGCTCCCTGCTGAGCACAATATTAATCCTGTCTTTTAAAGGACGGTTCTTCTCAGG 1932327 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 || |||||||| || ||||||||||| |||||| |||||||||| ||| Sbjct 1932326 GATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCTG 1932277 >seq9 Length=14393062 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| |||||||||||||| || |||||||| ||||| | ||| || | Sbjct 1410715 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCT 1410774 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | || || | || | || ||||| |||||||||| Sbjct 1410775 CCTCTCTGGTGCTGAAACCCTGCTTGTCCAGGAACTCACGCGACCCATTAGCATCCCAAA 1410834 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 1410835 TCTTCACACCTTTTGCAGAGAGCTCTTTG 1410863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361131273519989