Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq43 140 4e-28 seq120 100 3e-16 >seq43 Length=6032705 Score = 140 bits (154), Expect = 4e-28 Identities = 175/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | ||| |||||||| Sbjct 3252536 GGGCACGCCGTCGGGGCCAATGAGGAACTTCTCGAAGTTCCAGGAGATGTCATTGCGGCA 3252477 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| ||| ||| |||| | ||| |||| ||||||| || Sbjct 3252476 CACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGACGAGGGGTCGTCGTGCGG 3252417 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| |||||| ||||||| ||| || || || || |||| | |||| ||| Sbjct 3252416 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAACAGAGGGTGCGCGTCCTTCC--CGTTCACC 3252359 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||||| | ||| || || |||| ||||||| | |||||||| ||||||| Sbjct 3252358 TCGCACTTCTCGAACATCATGAAATTGGGCTTGAAGCCGCTGCCAGGACGAACGTGCT 3252301 >seq120 Length=2561492 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || || || ||||||| ||| | || Sbjct 1184458 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGTACGACCAGCCGCCGGGGG--TA 1184515 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 1184516 GCGGGCT-TGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGTGAAG 1184574 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||||||||| || | || |||||||| || Sbjct 1184575 CCACGTTCTCGATCAGGACCACGCGGCCCCGGAA 1184608 Score = 96.9 bits (106), Expect = 4e-15 Identities = 209/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Plus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || | ||| || ||| ||||||| | || | || Sbjct 1184057 CTGGATGTCGGGCTCCA--GCTGGGCTGTGGGCACACGGGGGCTGTAGCGCCGGAACGGT 1184114 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || |||| ||||||| ||||||||| || ||||||| | ||| ||| | ||| Sbjct 1184115 TCCCCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGTGATATCGGAGCGCCGCACA 1184174 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGC 83241 || |||| | | | |||| ||| || || ||| || | |||||| || || Sbjct 1184175 GGGCTCCAGACGACAAAGCGGGGCTCGGCCATCAG-GTGTGCAGGCTCGTCGGCCGGTGC 1184233 Query 83242 CGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTC 83298 |||||| | || | ||| ||||||| | ||||| || | | | |||| |||| Sbjct 1184234 GGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTGTCACTCC--CGTTCACCTG 1184290 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||| || | ||||| ||||||||||| ||| || || ||||||||||| Sbjct 1184291 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCGGGCCGCACGTGCTTCAG 1184350 Query 83359 GG 83360 || Sbjct 1184351 GG 1184352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608589512299560