Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq72 122 7e-23 seq66 113 4e-20 >seq72 Length=3839329 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| ||| ||||| || || ||||| ||||| | | Sbjct 3369132 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3369191 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| |||||||| ||||| ||| | || || |||||||| || ||| Sbjct 3369192 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3369251 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || |||| |||||| Sbjct 3369252 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3369311 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| ||||||||||| || | || || ||||| || ||||| |||| Sbjct 3369312 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGA 3369363 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||| ||||| || || ||||| ||||| | ||| || | |||| Sbjct 3368007 AGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCT 3368066 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || |||||||| || ||| | ||| |||||||| Sbjct 3368067 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3368126 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| ||||| || |||||| Sbjct 3368127 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTC 3368186 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGC 21173 ||||| || || || || || || || ||| Sbjct 3368187 TTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||| | ||| || || ||||| ||||| | ||| || | |||| Sbjct 3367779 AGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 3367838 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 3367839 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 3367898 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 3367899 TGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 3367958 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 3367959 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| ||||| || || |||||||| || | |||||| | |||| Sbjct 3368919 AGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGCCCGTCT 3368978 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || |||||| | || || ||||||||||| || | |||||||| || Sbjct 3368979 TCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCC 3369038 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||| ||| |||| || |||||| Sbjct 3369039 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTC 3369098 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 3369099 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||| ||| |||| ||| | ||| || || |||||||| | | |||||| | |||| Sbjct 3368235 AGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCT 3368294 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || |||||| | || || |||||||| || ||| | ||| |||||||| Sbjct 3368295 TCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3368354 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| ||||| || |||||| Sbjct 3368355 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTC 3368414 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGC 21173 ||||| || || || || || || || ||| Sbjct 3368415 TTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||| ||| |||| ||| | ||| || || |||||||| | | |||||| | |||| Sbjct 3368463 AGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCT 3368522 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || |||||| | || || |||||||| || ||| | ||| |||||||| Sbjct 3368523 TCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3368582 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| ||||| || |||||| Sbjct 3368583 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTC 3368642 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGC 21173 ||||| || || || || || || || ||| Sbjct 3368643 TTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||| ||| |||| ||| | ||| || || |||||||| | | |||||| | |||| Sbjct 3368691 AGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCT 3368750 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || |||||| | || || |||||||| || ||| | ||| |||||||| Sbjct 3368751 TCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3368810 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| ||||| || |||||| Sbjct 3368811 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTC 3368870 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGC 21173 ||||| || || || || || || || ||| Sbjct 3368871 TTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 >seq66 Length=4205697 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||| || || || ||||| ||||| | |||||| || | || Sbjct 1637504 AGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1637445 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | || || ||||||||||| ||| | ||| |||||||| Sbjct 1637444 TCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCT 1637385 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | | || |||| |||||| || | ||| |||||| Sbjct 1637384 TGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 1637325 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || || || || |||||||| Sbjct 1637324 TTGCCAGTCAGGGTCTTAACGAAGATCTGCATTTT 1637290 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||| |||||||| || ||||| ||||| | |||||| || | || |||||||| Sbjct 1637723 TGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGC 1637664 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || || | || || ||||||||||| || | |||||||||||| |||||| Sbjct 1637663 TTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTG 1637604 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | || |||| |||||| || | ||| ||||||||||| || Sbjct 1637603 GCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 1637544 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| |||||||| Sbjct 1637543 AGGGTCTTCACAAAGATTTGCAT 1637521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422119020370124