Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq72 141 1e-28 seq66 140 3e-28 seq22 129 6e-25 seq57 84.2 2e-11 >seq72 Length=3839329 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 3367990 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3367931 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| |||||||| ||| | |||||| Sbjct 3367930 GACACCATTGAGGATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 3367871 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||| || ||||||||| Sbjct 3367870 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 3367811 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||||| || ||||| || ||| ||||| | ||||| ||| Sbjct 3367810 ATCCAGAAAGAGGCGACTCTGCACCTGGTGCTGCGCCTCAGGGGGGGC 3367763 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 3369361 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 3369302 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| |||||||| ||| | || Sbjct 3369301 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 3369242 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| |||| |||||| || ||||||| Sbjct 3369241 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTAC 3369182 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| ||| | || ||||| || ||| ||||| |||| || || Sbjct 3369181 AACATCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3369132 Score = 122 bits (134), Expect = 9e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||| || ||||| || || | || ||||| |||||| || | || ||||| || || Sbjct 3368444 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368385 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | | |||| | |||| || || | ||||| |||||||| ||| | || |||| Sbjct 3368384 CACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGC 3368326 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | | || |||| ||||| || |||||||| |||| ||||||||| || || |||| Sbjct 3368325 AGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGTTTATAACA 3368266 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||| || ||||| || | | ||||| | ||||| || Sbjct 3368265 TCCAGAAAGAGGCGACTCTGCACCTGGCGCTGCGCCTCAGGGGTGG 3368220 Score = 122 bits (134), Expect = 9e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||| || ||||| || || | || ||||| |||||| || | || ||||| || || Sbjct 3368672 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368613 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | | |||| | |||| || || | ||||| |||||||| ||| | || |||| Sbjct 3368612 CACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGC 3368554 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | | || |||| ||||| || |||||||| |||| ||||||||| || || |||| Sbjct 3368553 AGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGTTTATAACA 3368494 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||| || ||||| || | | ||||| | ||||| || Sbjct 3368493 TCCAGAAAGAGGCGACTCTGCACCTGGCGCTGCGCCTCAGGGGTGG 3368448 Score = 122 bits (134), Expect = 9e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||| || ||||| || || | || ||||| |||||| || | || ||||| || || Sbjct 3368900 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368841 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | | |||| | |||| || || | ||||| |||||||| ||| | || |||| Sbjct 3368840 CACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGC 3368782 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | | || |||| ||||| || |||||||| |||| ||||||||| || || |||| Sbjct 3368781 AGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGTTTATAACA 3368722 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||| || ||||| || | | ||||| | ||||| || Sbjct 3368721 TCCAGAAAGAGGCGACTCTGCACCTGGCGCTGCGCCTCAGGGGTGG 3368676 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || ||| ||| Sbjct 3369130 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGT 3369071 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || || ||||| | |||||| Sbjct 3369070 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAG 3369011 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||||| || |||||||| |||| ||||||||| ||| || ||| Sbjct 3369010 CAGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGATTATAAC 3368951 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || || || || ||| ||||| | ||||| || Sbjct 3368950 ATCCAGAAAGAGTCAACTCTTCACCTGGTGCTGCGCCTCAGGGGTGG 3368904 Score = 116 bits (128), Expect = 4e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||| || ||||| || || | || ||||| |||||| || | || ||||| || || Sbjct 3368216 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368157 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | | |||| | |||| || || | ||||| |||||||| ||| | || |||| Sbjct 3368156 CACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGC 3368098 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | | || |||| || ||||| ||||| || |||| ||||| || |||||||||| Sbjct 3368097 AGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGCACTCTGTCTGACTACAACA 3368038 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||| | || ||||| || ||| ||||| | ||||| || Sbjct 3368037 TCCAGAAAGAGTCGACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3367992 >seq66 Length=4205697 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || ||||| ||||||||| | || ||||| Sbjct 1637288 GAAAAATGCAGATCTTCGTTAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGC 1637347 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||| | || || | ||||| |||||||| ||| | | Sbjct 1637348 CCAGTGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTG 1637407 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| ||| || || |||||||| || | || ||||| |||| Sbjct 1637408 ACCAGCAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACT 1637467 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| || |||| ||||| | ||| ||||| | ||||| || Sbjct 1637468 ACAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTCAGGGGTGG 1637519 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 1637521 ATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637580 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || |||||||| | |||||| Sbjct 1637581 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637640 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| || || |||||||| || | || ||||| ||||||||| Sbjct 1637641 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637700 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || ||||| | ||||| || Sbjct 1637701 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1637747 >seq22 Length=8423346 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||| ||||| || |||||||| || |||| ||| Sbjct 6658643 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 6658584 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 6658583 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCGGAGGAGGTG 6658530 >seq57 Length=5062550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 2138065 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 2138006 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 2138005 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 2137946 Query 117162 ACGAGG 117167 | |||| Sbjct 2137945 ATGAGG 2137940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515043774302640