Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq72 125 6e-24 seq66 114 1e-20 >seq72 Length=3839329 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| ||| || ||||||| || Sbjct 3369146 CAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTC 3369205 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||| || || |||||||||||||| Sbjct 3369206 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTC 3369265 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 3369266 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 3369325 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 3369326 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3369359 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || | |||||| || |||||||| || || ||||||| || Sbjct 3367778 CAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTC 3367837 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 3367838 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 3367897 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 3367898 CTGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 3367957 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 3367958 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| || || |||||| || Sbjct 3368006 CAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTC 3368065 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||| || || |||||||||||||| Sbjct 3368066 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTC 3368125 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| | |||||| || | || | || Sbjct 3368126 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGT 3368185 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 ||||| |||| || || || || |||||| Sbjct 3368186 CTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 >seq66 Length=4205697 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || || ||||| || |||||||| || || || || ||| Sbjct 1637505 CAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1637446 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| |||| || | |||||| || || || |||||||||||||| Sbjct 1637445 TTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 1637386 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || ||| || | || | |||||| || ||||||||| | ||| | || Sbjct 1637385 TTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1637326 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 1637325 CTTGCCAGTCAGGGTCTTAACGAAGATCTGCAT 1637293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433686379017388