Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq102 365 3e-96 seq27 87.8 1e-12 >seq102 Length=2881194 Score = 365 bits (404), Expect = 3e-96 Identities = 751/1109 (68%), Gaps = 16/1109 (1%) Strand=Plus/Plus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || ||||||||| ||| | |||| | || | Sbjct 221190 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCAGACAGCCATCCAGGAGGCGCAGCTCAA 221249 Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 ||||||||||||| ||| | || | | || | | | ||||| ||||| || Sbjct 221250 CAACCTGGAAGTGGCGAACAGAAGGGCTTTACCAACGCCCGGCGAGTACCTGAACATTAC 221309 Query 107642 CAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 || || || |||| |||||||| ||| || | ||| ||||||| || || Sbjct 221310 GAGGGATTGCAGAGC-CTTCAAGGAGACCC---GGCGCTACATCGAGTTCCCGCTCAGCC 221365 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 | || ||| || |||||||| |||||||| ||| | |||| | || || || | | Sbjct 221366 AGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCATCCACCACAAAATCGACATGT 221425 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| ||||| ||||| |||| || || || |||||| | ||||| ||||| || || Sbjct 221426 TTGAGCGGCTCCTGCGGTCCGTCTACGCTCCCCAGAACGTTTACTGCGTCCATGTAGACA 221485 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 || ||||| | | ||| | ||||| || | ||||||| | ||||||||||||||| Sbjct 221486 GCAAATCCCCGGCTGCCTTCCAGGAGGCCGTGAGGGCCATTGCTGCCTGCTTCCCCAATG 221545 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||| ||||||| | | ||||| ||||||||||||||| | ||||| || | Sbjct 221546 TCTTCGTGGCCAGCCGCCTAGAAAGCGTGGTCTATGCCTCCTGGTCCCGGGTGCAGGCCG 221605 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||| ||||| ||| | ||| | || |||||| | ||||||||| ||| | | || | Sbjct 221606 ACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCTGTGCCATGGCGCTACCTCATCAACA 221665 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | ||||| || ||||||||||| |||||||| |||||||| || | ||| || || || Sbjct 221666 CCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTGCGGGCGCTGCAGCTGC 221725 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| |||||| |||||||| ||| ||||| | |||| | | |||||| Sbjct 221726 TGCAGGGCCAGAACACCATGGAGTCCGAGAGGCCTTCGGCCGCCAAGCAGCAGCGCTGGG 221785 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 | || | | | |||||| || || | | | || | ||| ||| || || | Sbjct 221786 AGTATCACCACGAGGTGGGGGAGACCATCTCTCGCACTTCCCAGAAGAAACTGCCCCCAC 221845 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 | | | | ||||||||||| || | ||||| | | | | || | ||| || | Sbjct 221846 CCCACAGCTACCCCATGTTCACGGGCAGCGCCTACAACGCCGTCACACGGGACTTCGTGC 221905 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 | |||| | ||||| | | |||| | | || ||| ||| |||| ||| | Sbjct 221906 GGTACATCTTCAAGAACCCCACCGCACAAAAGTTCCTCGAGTGGTCCAAGGACAGCTACA 221965 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCTCTG 108354 |||| ||||| || | ||||||||||| | || ||| | |||| ||| | | Sbjct 221966 GCCCTGACGAGTACGTGTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCAC-G 222024 Query 108355 TTCCT-AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAG 108413 ||| ||| | |||| || |||| ||||||| ||| | || | || |||||| Sbjct 222025 CCCCTCAGCGA---TAAGTTCCAACTCTCGGACATGAACGCCCTTCCCCGCCTGGTCAAG 222081 Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATC 108473 ||| |||||| ||||| || | |||| ||| ||||| || | |||||| | || | Sbjct 222082 TGGGAGTACCTGGAGGGGGACATGAGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGC 222141 Query 108474 CATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCAT 108533 || | | | |||||||||| ||||||| || ||| || |||||| || ||| | || Sbjct 222142 CACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAACAC 222201 Query 108534 CACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAA 108593 || ||| |||| |||||||| ||||| |||||| ||| | | | ||||| | || Sbjct 222202 CATCTCCTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCGTCCAGTGTCTCGAG 222261 Query 108594 GAGTACCTACGTCATAAGGCCATCTATGG 108622 |||||||| || || |||||| | || || Sbjct 222262 GAGTACCTGCGCCACAAGGCCCTGTACGG 222290 >seq27 Length=7367374 Score = 87.8 bits (96), Expect = 1e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||| || || ||||| || || |||| ||||| || | ||| | Sbjct 3126012 TTGAGTGGGCGAAAGATACTTACAGCCCAGATGAGTACCTGTGGGCAACAATCCAGAGAA 3125953 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 ||| || | | || ||| | || || | |||||| || | || ||||||| | Sbjct 3125952 -TCCCTGAAGTCCCAGGCGCATTTTCTTCCAGTGACAAGTACGACGTTTCTGACATGAAT 3125894 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 ||| | |||||| | ||||||||||||||| || || ||||| || || || || Sbjct 3125893 GCCCTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGATGTGTCCAAAGGTGCACCC 3125834 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||| ||| |||| | || | | |||| ||| || | || ||| || Sbjct 3125833 TACCCACCGTGCAGTGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGAGTAGGAGACTTG 3125774 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||||| || | |||||| ||| | || || || ||||||||| Sbjct 3125773 AACTGGATGCTACGGAACCACCACTTATTTGCTAATAAGTTTGAC 3125729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348153183356286