Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq72 140 3e-28 seq66 116 3e-21 >seq72 Length=3839329 Score = 140 bits (154), Expect = 3e-28 Identities = 183/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| || ||| ||||| |||||||||||| | Sbjct 3369132 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3369191 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| || || || || || |||| || ||| || || || || Sbjct 3369192 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3369251 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | | |||| | ||| ||| Sbjct 3369252 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3369311 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG-CCT-CAAT 45347 || | ||| || |||||||| ||||| |||||||||||||| ||||||||| ||| ||| Sbjct 3369312 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGACCTGCAAA 3369371 Query 45348 ACACACAGATG 45358 ||| ||||||| Sbjct 3369372 ACATACAGATG 3369382 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||| ||||| ||||||||||| ||| ||| |||| ||| Sbjct 3367782 ACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCC 3367841 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 3367842 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 3367901 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || || | | | |||| | ||| ||||| | ||| || |||||| Sbjct 3367902 ATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 3367961 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 3367962 CCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||| ||||| ||||||||||| ||| ||| |||| || Sbjct 3368010 ACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCA 3368069 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || || || | |||||||||||| Sbjct 3368070 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3368129 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| || |||| || || |||||| Sbjct 3368130 ATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTG 3368189 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGC 45334 || |||| |||||||| ||||| ||| Sbjct 3368190 CCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| || ||| ||||| ||||| || || ||| ||| |||| |||| Sbjct 3368239 CCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCA 3368298 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | |||||||||||| | Sbjct 3368299 GCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 3368358 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| || |||| || || ||||||| Sbjct 3368359 TCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGC 3368418 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGC 45334 | |||| |||||||| ||||| ||| Sbjct 3368419 CAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| || ||| ||||| ||||| || || ||| ||| |||| |||| Sbjct 3368467 CCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCA 3368526 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | |||||||||||| | Sbjct 3368527 GCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 3368586 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| || |||| || || ||||||| Sbjct 3368587 TCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGC 3368646 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGC 45334 | |||| |||||||| ||||| ||| Sbjct 3368647 CAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| || ||| ||||| ||||| || || ||| ||| |||| |||| Sbjct 3368695 CCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCA 3368754 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | |||||||||||| | Sbjct 3368755 GCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 3368814 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| || |||| || || ||||||| Sbjct 3368815 TCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGC 3368874 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGC 45334 | |||| |||||||| ||||| ||| Sbjct 3368875 CAGTCAAGGTCTTCACGAAGATCTGC 3368900 >seq66 Length=4205697 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||| ||||||||||| ||| || | || ||||| || Sbjct 1637724 GTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTG 1637665 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| ||||| ||||| | || ||||||||| || || Sbjct 1637664 CTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTT 1637605 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| ||||| | ||| || |||||||| || Sbjct 1637604 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGT 1637545 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||||||||||||||| Sbjct 1637544 CAGGGTCTTCACAAAGATTTGCAT 1637521 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| || ||||| ||||||||||| ||| || | || ||| Sbjct 1637501 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 1637442 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| ||||| || || | ||||||||||| Sbjct 1637441 AGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGG 1637382 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 1637381 ATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 1637322 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 || ||||| ||||| || ||||| ||||| || || Sbjct 1637321 CCAGTCAGGGTCTTAACGAAGATCTGCATTTTTCC 1637287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394944044787019