Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq158 129 5e-25 seq72 104 2e-17 seq66 89.7 5e-13 >seq158 Length=1624924 Score = 129 bits (142), Expect = 5e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || ||| |||||||| ||||| ||||| || || ||||| || || || | Sbjct 177795 CCACCTCATCCTTGCTGGTGTACTCCACAATCTCGGTGCACAGGTTGCTGCATTTGATGG 177736 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| || ||||||||||||||||| || | Sbjct 177735 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 177676 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||| ||||||||||| || Sbjct 177675 TGCCAGTCTCGGTCTGGGACTCGATGATGGC 177645 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||| || ||||| || ||||| ||||| ||||||| || | ||| | Sbjct 176533 TTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTC 176474 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| ||||| |||| || || || | |||| |||| Sbjct 176473 GCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCC 176414 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | |||||| || || ||||||| Sbjct 176413 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 176378 >seq72 Length=3839329 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| | || || ||||| Sbjct 3369130 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGT 3369071 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| |||||||| | || || |||||| Sbjct 3369070 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAG 3369011 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || ||| |||||||| || || |||||||||| Sbjct 3369010 CAGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGATTATAAC 3368951 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 || || ||||| || |||||||| ||||| || | || ||||| || || Sbjct 3368950 ATCCAGAAAGAGTCAACTCTTCACCTGGTGCTGCGCCTCAGGGGTGGGAG 3368901 >seq66 Length=4205697 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 1637521 ATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637580 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 1637581 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637640 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| ||||||| || || || || ||| Sbjct 1637641 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637700 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || || || || | || ||||| |||| Sbjct 1637701 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGGTA 1637749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445614622112880