Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq57 129 8e-25 seq22 120 4e-22 seq158 96.9 5e-15 >seq57 Length=5062550 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 2137940 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 2137999 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 2138000 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2138059 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 2138060 CAACCACTCTCTCACC 2138075 >seq22 Length=8423346 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 6656052 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6656111 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||||| Sbjct 6656112 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6656171 Query 50102 CAAC 50105 | || Sbjct 6656172 CCAC 6656175 >seq158 Length=1624924 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| ||||| | || || || |||| || ||| Sbjct 176528 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 176469 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 176468 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 176409 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 176408 TCCAGGTAGATGGCAAAAGCCCCAGGTC 176381 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || || || || | || || || || ||||| | Sbjct 184606 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCAGCAATGTGGATGT 184547 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || || |||||||| || |||||||||||||| || | ||| || | Sbjct 184546 TCAGGGACTGGCTCTGGTCAATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 184487 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 |||| | || ||||| | ||| || || | |||| | || || |||| Sbjct 184486 TTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAA 184436 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || |||||||| || || || ||||| || | |||||| | | Sbjct 171402 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 171343 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||| || || || || | || || ||||| || | || || ||||||||||||| Sbjct 171342 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 171283 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || ||||| || || || | || | || ||||| |||||||| Sbjct 171282 GCTCCACCGTGGTGACCCCGCTGTAGAGCCCCTGGATCACCTTCAT 171237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718024238451960