Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq57 129 8e-25 seq22 120 4e-22 seq158 93.3 6e-14 >seq57 Length=5062550 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 2137940 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 2137999 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 2138000 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2138059 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 2138060 CAACCACTCTCTCACC 2138075 >seq22 Length=8423346 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 6656052 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6656111 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||||| Sbjct 6656112 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6656171 Query 42207 C 42207 | Sbjct 6656172 C 6656172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 |||| ||||| |||||||| | || |||||||| || || || || || ||||| |||| Sbjct 6654826 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 6654884 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 6654885 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 6654924 >seq158 Length=1624924 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || |||||||| || || || ||||| || | |||||| || | Sbjct 171402 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 171343 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || || || | || || ||||| || | ||||| ||||||||||||| Sbjct 171342 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 171283 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || ||||| || || || | || | || ||||| |||||||| Sbjct 171282 GCTCCACCGTGGTGACCCCGCTGTAGAGCCCCTGGATCACCTTCAT 171237 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||| ||||| ||||| | || || || |||| || ||| Sbjct 176528 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 176469 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 176468 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 176409 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 176408 TCCAGGTAGATGGC 176395 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || || || ||| | || || || ||||| || | Sbjct 184606 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCAGCAATGTGGATGT 184547 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || || |||||||| || |||||||||||||| || | ||| || | Sbjct 184546 TCAGGGACTGGCTCTGGTCAATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 184487 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 |||| | || ||||| | ||| || || | |||| | || || |||| Sbjct 184486 TTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAA 184436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670910685491640