Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq158 84.2 3e-11 seq57 84.2 3e-11 >seq158 Length=1624924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 |||||||| || || ||||| ||||||||||| || || | || |||||||| | Sbjct 177666 GAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCAG 177725 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || ||||||||||||| || ||| |||||||| || ||||| |||||| || Sbjct 177726 AACCTGGGCACCATCAAATGCAGCAACCTGTGCACCGAGATTGTGGAGTACACC 177779 >seq57 Length=5062550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 2138072 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 2138013 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| ||| |||| Sbjct 2138012 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGAC 2137972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740806878605640