Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq32 161 2e-34 seq66 140 7e-28 seq57 116 9e-21 seq22 107 4e-18 seq615 84.2 5e-11 >seq32 Length=6925586 Score = 161 bits (178), Expect = 2e-34 Identities = 131/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 78492 TATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTAC 78551 |||||||||||||| ||||||||||||| || || | ||||| | ||||||||||| Sbjct 3215261 TATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATCCTGA 3215202 Query 78552 GAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTT 78611 | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| || | Sbjct 3215201 GGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTCACCT 3215142 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || | ||||| |||||||| ||| | ||||| ||||||| Sbjct 3215141 TGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 3215103 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| |||| ||| | || | || || |||||||| | ||| Sbjct 3212900 GGACA-GCTTTTTTCGGAGCTCAAATGAATGCGTTTATTCATGTCATTATGTACATGTAT 3212842 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 || || | || || || ||||||| ||||| || || ||||||||||| ||||| | Sbjct 3212841 TATGGATTGGCAGCTTGTGGCCCTAAATTTCAGAAATACTTGTGGTGGAAACGATATTTG 3212782 Query 78764 ACTATAATGCAATTG 78778 || ||| |||||||| Sbjct 3212781 ACCATATTGCAATTG 3212767 >seq66 Length=4205697 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || |||||||| || || | || ||||| || || || || Sbjct 1637489 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCT 1637430 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || ||||| || || || || || || || ||||| ||||| Sbjct 1637429 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTG 1637370 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 1637369 ACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1637310 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 1637309 TTAACGAAGATCTGCATTTT 1637290 >seq57 Length=5062550 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 2138063 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 2138004 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 2138003 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 2137944 Query 269258 GA 269259 || Sbjct 2137943 GA 2137942 >seq22 Length=8423346 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 6656187 GGAGAACGTGTAGTGGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 6656128 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 6656127 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 6656068 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 6656067 ATCAGTAGAGATGA 6656054 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| ||||| ||||||| || || || | || || | ||||| || || | Sbjct 6657806 TCTAGGTGGAGCAGTTCAGTCAAGAAGTGCAAATCACAGAGGCTCGCTGTTTCTATGGCT 6657747 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 6657746 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACA 6657687 Query 269016 T 269016 | Sbjct 6657686 T 6657686 >seq615 Length=42167 Score = 84.2 bits (92), Expect = 5e-11 Identities = 175/257 (68%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| |||||| Sbjct 12512 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAAT 12453 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAGGAAGTAGTTGCTTTCCACGC-G 174191 ||||| |||||| |||||| |||| | || |||| | | | |||| | | | Sbjct 12452 TTTCAACTGTTTGCCATTCCAGGTTTCTGTTTTGCCAG--ATGACAAGGATTCCCCACAG 12395 Query 174192 ATG-AGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATT 174250 | | || || ||| | ||| |||| ||| || || | | | ||| |||| |||| || Sbjct 12394 AGGTTGGCAACAAGCTGTCTGACTTCCTTCATTTTCCCTTTGGCATAGAATGCCTGTGTT 12335 Query 174251 TGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACT 174310 ||||| || | || |||| ||| ||| || || ||| ||||| || |||| Sbjct 12334 TGGTAAATGGTTGCCTTTGGCACTACCATACGGGAAGAGCAATTCTCAATCTCAGCAAAG 12275 Query 174311 ATCCTAACGTATTCACC 174327 ||| || ||||||| Sbjct 12274 ATCTGAATTGATTCACC 12258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150996562318212