Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 3e-13 seq95 86.0 3e-12 seq102 82.4 4e-11 seq7 82.4 4e-11 >seq24 Length=8342771 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||||| |||||||| | |||||||||| ||||||| |||||||||||| Sbjct 1618099 AAAAAAAAATCGGCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 1618158 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 1618159 CCACGCTCTAACCAACTGAGCTAACCGGCC 1618188 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| ||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 1623346 AAAAATAAAAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 1623404 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 1623405 CTCTAACCAACTGAGCTAACCGGCC 1623429 >seq95 Length=2992975 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1213023 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1212964 Query 11528 CCGTCG 11533 ||| || Sbjct 1212963 CCGGCG 1212958 >seq102 Length=2881194 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1543996 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1543937 Query 11528 CC 11529 || Sbjct 1543936 CC 1543935 >seq7 Length=16983252 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 5975894 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5975835 Query 11528 CC 11529 || Sbjct 5975834 CC 5975833 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261404391377164