Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq61 170 3e-37 seq33 116 5e-21 >seq61 Length=4751131 Score = 170 bits (188), Expect = 3e-37 Identities = 216/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| || || |||||| | |||| || ||| | | || Sbjct 4588993 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 4589052 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| |||| ||||| | || |||||||||||||| |||||||| | || | Sbjct 4589053 TGTTGATGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGAG 4589112 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| || || ||||||| ||| | ||| Sbjct 4589113 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 4589172 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| || |||||||| ||||||| | || | ||||| ||||| Sbjct 4589173 TCTCCCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 4589232 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||||||| || || || || || || || || || |||||||||| Sbjct 4589233 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 4589289 Score = 102 bits (112), Expect = 1e-16 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | ||||| || | |||||| || || || ||||| ||| || || || Sbjct 4590908 TCACCGATGAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 4590967 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || || || ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 4590968 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 4591027 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || |||||||| || || |||| || || || | | |||| | || ||| Sbjct 4591028 ATGAGCCCCGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCAGGC 4591087 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| || || | ||| | |||| || |||| || || |||||||| Sbjct 4591088 ACATGGGGTGGGTACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATTTCT 4591147 Query 9850 CCGTCAATAATCTG 9863 || || || ||||| Sbjct 4591148 CCATCGATCATCTG 4591161 >seq33 Length=6734157 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 1588869 TCTTCACGATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1588928 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1588929 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1588988 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| |||| || |||| || || || | ||| ||||||| Sbjct 1588989 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1589048 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 1589049 GAGCATCAATGTCTCCATACAG 1589070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708283556162160