Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq72 127 2e-24 seq66 104 2e-17 >seq72 Length=3839329 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||| ||||| ||| || || || || | ||| || ||| | Sbjct 3369132 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3369191 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| || |||||||| || || ||||||| | || ||||||||||| ||| Sbjct 3369192 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3369251 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| || | | |||||| | | || || Sbjct 3369252 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3369311 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| |||||||| || ||||| || || |||||||||||||||||| Sbjct 3369312 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3369359 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | ||| || || || || | |||||||||| || ||| Sbjct 3368916 CGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGCCCG 3368975 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || ||||| || Sbjct 3368976 TCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTA 3369035 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| |||||| | | || || || | |||||| Sbjct 3369036 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATG 3369095 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 3369096 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||| | || || || | ||| || || || |||| Sbjct 3367776 CGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCG 3367835 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || || ||||| || || ||| Sbjct 3367836 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTG 3367895 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | | |||||| | | || || |||| |||||| Sbjct 3367896 TCCTGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 3367955 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 3367956 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||| || || || || | ||| || || || |||| Sbjct 3368004 CGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCG 3368063 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || ||||||| | || ||||||||||| ||||| || || ||| Sbjct 3368064 TCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 3368123 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | |||||| | | ||||| || | | |||| Sbjct 3368124 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATG 3368183 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || ||||| | || ||||| ||||||||| Sbjct 3368184 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| | ||| ||||| ||| | || || || | ||||||| || || ||| Sbjct 3368232 CGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCG 3368291 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||||||||| ||||| || || ||| Sbjct 3368292 TCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 3368351 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | |||||| | | ||||| || | | |||| Sbjct 3368352 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATG 3368411 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || ||||| | || ||||| ||||||||| Sbjct 3368412 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| | ||| ||||| ||| | || || || | ||||||| || || ||| Sbjct 3368460 CGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCG 3368519 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||||||||| ||||| || || ||| Sbjct 3368520 TCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 3368579 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | |||||| | | ||||| || | | |||| Sbjct 3368580 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATG 3368639 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || ||||| | || ||||| ||||||||| Sbjct 3368640 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| | ||| ||||| ||| | || || || | ||||||| || || ||| Sbjct 3368688 CGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCG 3368747 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||||||||| ||||| || || ||| Sbjct 3368748 TCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 3368807 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | |||||| | | ||||| || | | |||| Sbjct 3368808 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATG 3368867 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || ||||| | || ||||| ||||||||| Sbjct 3368868 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 >seq66 Length=4205697 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||| ||||| || || | ||| || || || || | | Sbjct 1637507 CGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1637448 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | || ||||| || || ||||| || || ||| Sbjct 1637447 TCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTG 1637388 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || ||||| | | |||||| | | ||||| |||| |||||| Sbjct 1637387 TCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 1637328 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || || ||||||||||| Sbjct 1637327 GTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCAT 1637293 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||||| ||| || ||||| || | ||| || || || || | | Sbjct 1637735 CGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1637676 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | || ||||| || ||||| || ||||| ||| Sbjct 1637675 TCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1637616 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | |||||| | | ||||| |||| |||||| Sbjct 1637615 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 1637556 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||| ||||| Sbjct 1637555 GTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448138562450040