Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq57 129 7e-25 seq22 114 2e-20 seq158 95.1 2e-14 >seq57 Length=5062550 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 2137940 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 2137999 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 2138000 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2138059 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 2138060 CAACCACTCTCTCACC 2138075 >seq22 Length=8423346 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 6656052 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6656111 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || |||||||||||||||||||| || || ||||||| Sbjct 6656112 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6656171 Query 33446 C 33446 | Sbjct 6656172 C 6656172 Score = 82.4 bits (90), Expect = 1e-10 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 |||| ||||| |||||||| | || |||||||| || || || || || ||||| || | Sbjct 6654826 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 6654884 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 6654885 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 6654924 >seq158 Length=1624924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||| ||||| ||||||||||| ||||| ||||| | || || || |||| || || Sbjct 176529 CACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTG 176470 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 176469 CTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 176410 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 176409 CTCCAGGTAGATGGCAAAAGCCCCAGG 176383 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || |||||||| || || || ||||| || | |||||| || | Sbjct 171402 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 171343 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||| || || || || | || || ||||| || | || || ||||||||||||| Sbjct 171342 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 171283 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || ||||| || || || | || | || || || |||||||| Sbjct 171282 GCTCCACCGTGGTGACCCCGCTGTAGAGCCCCTGGATCACCTTCAT 171237 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || || || || | || || || || ||||| | Sbjct 184606 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCAGCAATGTGGATGT 184547 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || || |||||||| || |||||||||||||| || | ||| || | Sbjct 184546 TCAGGGACTGGCTCTGGTCAATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 184487 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 |||| | || ||||| | ||| || || | |||| | || || |||| Sbjct 184486 TTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAA 184436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622735094265240