Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq66 179 7e-40 seq72 178 2e-39 seq203 91.5 3e-13 seq22 89.7 9e-13 >seq66 Length=4205697 Score = 179 bits (198), Expect = 7e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || ||||| ||||| |||||||| || || || || || | Sbjct 1637510 AGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 1637451 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| ||||| || || || || ||||| || |||||||| ||| Sbjct 1637450 CCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 1637391 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| || ||||| ||| |||||||| | || || || | |||| Sbjct 1637390 TTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 1637331 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||||| ||||| ||||||||| Sbjct 1637330 ATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCATT 1637292 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || || ||||| || |||||||| || || || || || | Sbjct 1637738 AGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 1637679 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| ||||| || || || || ||||| || || ||||||||| Sbjct 1637678 CCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1637619 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 1637618 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 1637559 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || || ||||| Sbjct 1637558 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 >seq72 Length=3839329 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || || |||||||| ||||||||||||||||| || || | | Sbjct 3368913 AGGCGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGC 3368972 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | ||||||||| || || || || || || ||||| || || || |||||| Sbjct 3368973 CCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCC 3369032 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| || |||||||||||| | ||| || |||| ||| Sbjct 3369033 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTG 3369092 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 3369093 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 159 bits (176), Expect = 6e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| ||| ||| || || | |||||| |||||||||||| |||| || || | | Sbjct 3368229 AGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGC 3368288 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | ||||||||| || || || || || || || || || |||||||| ||| Sbjct 3368289 CCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCC 3368348 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | || ||||||| || | Sbjct 3368349 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGG 3368408 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 ||||| || || || | |||||| ||||| |||||| Sbjct 3368409 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 159 bits (176), Expect = 6e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| ||| ||| || || | |||||| |||||||||||| |||| || || | | Sbjct 3368457 AGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGC 3368516 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | ||||||||| || || || || || || || || || |||||||| ||| Sbjct 3368517 CCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCC 3368576 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | || ||||||| || | Sbjct 3368577 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGG 3368636 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 ||||| || || || | |||||| ||||| |||||| Sbjct 3368637 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 159 bits (176), Expect = 6e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| ||| ||| || || | |||||| |||||||||||| |||| || || | | Sbjct 3368685 AGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGC 3368744 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | ||||||||| || || || || || || || || || |||||||| ||| Sbjct 3368745 CCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCC 3368804 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | || ||||||| || | Sbjct 3368805 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGG 3368864 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 ||||| || || || | |||||| ||||| |||||| Sbjct 3368865 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 >seq203 Length=1195537 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 ||| ||| || ||||| |||| || |||||| | | ||| ||||| ||||| || | Sbjct 1141758 CCAGGTGAAGGGTGGATTCTTGTTAGATGTTGCAGTTGGACAGTGTGTGTCCATCCTCCA 1141817 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||||| || || || || || || || | || ||||| ||||| || || | Sbjct 1141818 GCTGCTTCCCAGCAAAGATCAGCTGCTGCTGATCCCGAGGGATGCCCTCCTTATCCTGGA 1141877 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 ||||||| | || || | || || | | ||| | | | || ||||||||| | Sbjct 1141878 TCTTTGCGTCTACATTTTCTGTAGTATCAGAAGGTTCAGCCTTGAGGGCGATGGTTTTCC 1141937 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||| | | | |||||||| Sbjct 1141938 CCGTGAGGGTCTTCATGGAGATCTGCAT 1141965 >seq22 Length=8423346 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 6658531 ACCTCCTCCGCCGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 6658590 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 6658591 TACTGGATGGGGAA 6658604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921308599093080