Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq72 134 3e-26 seq66 109 1e-18 seq203 86.0 1e-11 >seq72 Length=3839329 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || |||| || ||||| ||||| ||||| |||| Sbjct 3368904 CCACCCCTGAGGCGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGAC 3368963 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || || |||||||| | ||| || | ||| Sbjct 3368964 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3369023 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || ||||| || || || | || || | ||| || Sbjct 3369024 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACC 3369083 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 3369084 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 113 bits (124), Expect = 1e-19 Identities = 141/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || |||||||||||||| | || || || || ||| Sbjct 3368028 TCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCAAGCTGCTTGCCAGCAAAG 3368087 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || ||||||| || || || || |||||||| || || |||||| Sbjct 3368088 ATCAGCCTCTGCTG---ATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 3368144 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | | || ||||| || | ||| ||||| || |||| ||||| Sbjct 3368145 TTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTC 3368204 Query 288460 ACGAATATCTGC 288471 ||||| |||||| Sbjct 3368205 ACGAAGATCTGC 3368216 >seq66 Length=4205697 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || || || || ||||| | || || |||||||| Sbjct 1637484 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAA 1637425 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| || | || || || || || || ||||| || ||||| || || Sbjct 1637424 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATT 1637365 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 1637364 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAAC 1637305 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 1637304 GAAGATCTGCATT 1637292 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || || ||||| | || || ||||||||| Sbjct 1637711 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAG 1637652 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| ||||| || |||||||| || || || || || Sbjct 1637651 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 1637592 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 1637591 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1637532 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1637531 AAGATTTGCAT 1637521 >seq203 Length=1195537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||| || | || |||| ||| ||||| || ||| || ||| || Sbjct 1141739 CCACCACAAAGTCCCAGCCCCAGGTGAAGGGTGGATTCTTGTTAGATGTTGCAGTTGGAC 1141798 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||| |||| || || | || || || || |||||||| |||| ||| ||| Sbjct 1141799 AGTGTGTGTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCTGCTGCTGATCCCGAGGG 1141858 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || | || |||||| ||| ||| | ||| | Sbjct 1141859 ATGCCCTCCTTATCCTGGATCTTTGCGTCTACATTTTCTGTAGTATCAGAAGGTTCAGCC 1141918 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| | ||| || ||||| || || ||||| | | | |||||||| Sbjct 1141919 TTGAGGGCGATGGTTTTCCCCGTGAGGGTCTTCATGGAGATCTGCAT 1141965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179242700983042