Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq72 111 1e-19 seq158 104 2e-17 seq66 95.1 1e-14 >seq72 Length=3839329 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| || || ||||| ||| || ||||| Sbjct 3369144 CGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCG 3369203 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||| || || |||||||||||| Sbjct 3369204 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 3369263 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| || || | ||| | Sbjct 3369264 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 3369323 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 3369324 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3369359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || | |||||| || || ||||| || || ||||| Sbjct 3367776 CGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCG 3367835 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 3367836 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTG 3367895 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| || || | ||| | Sbjct 3367896 TCCTGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 3367955 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 3367956 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| || || ||||| || || ||||| Sbjct 3368004 CGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCG 3368063 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||| || || |||||||||||| Sbjct 3368064 TCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 3368123 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| ||||||||| | || | Sbjct 3368124 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATG 3368183 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 || ||||| |||| || || || || |||||| Sbjct 3368184 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 >seq158 Length=1624924 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||| |||||| | |||| ||||||||||| ||| ||||||||||| |||||| |||| Sbjct 177791 CTCATCCTTGCTGGTGTACTCCACAATCTCGGTGCACAGGTTGCTGCATTTGATGGTGCC 177732 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| |||||||||||||||||| || || Sbjct 177731 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 177672 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || ||| | || ||||| |||| Sbjct 177671 AGTCTCGGTCTGGGACTCGATGATG 177647 >seq66 Length=4205697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || ||||| || || ||||| || || || || | Sbjct 1637507 CGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1637448 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| | |||||| || || || |||||||||||| Sbjct 1637447 TCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTG 1637388 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || |||| | || | |||||| | |||||| || | ||| | Sbjct 1637387 TCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 1637328 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 1637327 GTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCAT 1637293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475338897921360