Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq61 176 7e-39 seq33 114 2e-20 >seq61 Length=4751131 Score = 176 bits (194), Expect = 7e-39 Identities = 219/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| |||||||| ||| || ||||| ||| | || || | Sbjct 4588993 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 4589052 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | |||||| || || || | || |||||||||||||| ||||||||| | || | Sbjct 4589053 TGTTGATGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGAG 4589112 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| || || ||||||| ||| | ||| Sbjct 4589113 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 4589172 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| || || || || || || || | | ||| | ||| || || | Sbjct 4589173 TCTCCCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 4589232 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| ||||| || | |||| ||| || || ||||| || || ||| ||| Sbjct 4589233 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 4589292 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || | ||| || || | ||||||||| |||| || ||||| | ||| ||||| Sbjct 4590920 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGC 4590979 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | |||||| Sbjct 4590980 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCCGGC 4591039 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | |||||||| | || ||||| | ||| | Sbjct 4591040 ACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCAGGCACATGGGGTGGG 4591099 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | |||| || || || || || || |||||||| || || || | | Sbjct 4591100 TACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATTTCTCCATCGATCATC 4591159 Query 9967 TG 9968 || Sbjct 4591160 TG 4591161 Score = 105 bits (116), Expect = 1e-17 Identities = 168/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| || ||| |||| | | |||||| |||||||| | ||| Sbjct 4589761 GAAAGATTTGACCATATGGGATAGTCCATGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 4589820 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| || | || || |||| ||| | ||||| Sbjct 4589821 CTGCTGGAAGGTGTACTCCTGGTCGTGGATCTGGAAGGTGTCGGGCAGCAGCGGGTGCCA 4589880 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || ||||||||||| || || ||| | Sbjct 4589881 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTATTGGAACTTCTGGT--TG 4589938 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 |||| | ||| |||||||| | |||| |||||||||||| || || ||||| ||||| Sbjct 4589939 AACAACAGCTCAGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACATA 4589997 >seq33 Length=6734157 Score = 114 bits (126), Expect = 2e-20 Identities = 207/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTG--GCACAAATGAGGGACTGAATGGTTGC 8937 ||||||| | |||| || |||||| ||| ||||| | || || | || ||| Sbjct 1588809 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACA--AGCTTCTCCAGGGATGC 1588866 Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997 || |||||||| || || || | || || || || ||||||||||||||| | || Sbjct 1588867 CGTCTTCACGATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGG 1588926 Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057 |||||||||| || | | ||||| |||| |||||| ||||| || | ||| | || Sbjct 1588927 GGAGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCAT 1588986 Query 9058 GCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTC 9117 ||| || || || ||| || ||| | ||||| || | | ||||| | ||| | || Sbjct 1588987 GCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTC 1589046 Query 9118 GACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTAC 9177 | ||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| | Sbjct 1589047 CAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGC 1589106 Query 9178 A 9178 | Sbjct 1589107 A 1589107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723481579662600