Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq66 147 2e-30 seq72 136 4e-27 seq22 91.5 1e-13 seq57 87.8 2e-12 >seq66 Length=4205697 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || || ||||| ||||||||| | || |||||| | Sbjct 1637289 AAAAATGCAGATCTTCGTTAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 1637348 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | |||| || |||| ||||| ||||| |||||| | || Sbjct 1637349 CAGTGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGA 1637408 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | ||| || || |||||||| || | || ||||| ||||| Sbjct 1637409 CCAGCAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTA 1637468 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || ||| | || ||||| ||||||||||| Sbjct 1637469 CAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCG 1637507 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 1637521 ATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637580 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | ||||| Sbjct 1637581 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637640 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| || || |||||||| || | || ||||| ||||||||| Sbjct 1637641 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637700 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| | || ||||| Sbjct 1637701 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCG 1637735 >seq72 Length=3839329 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 3367990 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3367931 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 3367930 GACACCATTGAGGATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 3367871 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| |||||| || ||||||||| Sbjct 3367870 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 3367811 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || ||||| ||||| |||||||||| | || || ||| Sbjct 3367810 ATCCAGAAAGAGGCGACTCTGCACCTGGTGCTGCGCCTCAGGGGGGGC 3367763 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 3369361 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 3369302 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| |||||| | || Sbjct 3369301 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 3369242 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| |||| |||||| || ||||||| Sbjct 3369241 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTAC 3369182 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || || | || ||||| |||||||||| ||||||| || Sbjct 3369181 AACATCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3369132 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||| || ||||| || || | || ||||| |||||| || | || |||||| || || Sbjct 3368216 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368157 Query 38306 CAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || | | | |||| | || | || |||| ||||| ||||| |||||| | || || | Sbjct 3368156 CACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGC 3368098 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 || |||| || | || ||||| ||||| || |||| ||||| || |||||||||| Sbjct 3368097 AGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGCACTCTGTCTGACTACAACA 3368038 Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || || |||| ||||| |||||||||| Sbjct 3368037 TCCAGAAAGAGTCGACTCTGCACCTGGTGCTGCG 3368004 >seq22 Length=8423346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 6658530 CACCTCCTCCGCCGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 6658589 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || || ||||||||||| || |||| |||||||||| Sbjct 6658590 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 6658644 >seq57 Length=5062550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 2137940 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 2137999 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 2138000 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2138059 Query 133037 CCACCA 133042 | |||| Sbjct 2138060 CAACCA 2138065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500002497413760