Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq72 100 2e-16 seq66 89.7 4e-13 >seq72 Length=3839329 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||||| || || || |||||| || || ||||| ||||| Sbjct 3367763 GCCCCCCCTGAGGCGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGA 3367822 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 3367823 CAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3367882 Query 48659 AACGCCCTCCTTGTC 48673 || |||||||||||| Sbjct 3367883 AATGCCCTCCTTGTC 3367897 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||||| || || || |||||| || || ||||| ||||| Sbjct 3367992 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 3368051 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| || | |||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 3368052 AGAGTGCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368111 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 3368112 ATGCCCTCCTTGTC 3368125 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || || || |||||| || || ||||| || || Sbjct 3369132 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3369191 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| |||| |||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 3369192 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3369251 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || | ||| ||| Sbjct 3369252 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3369311 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| || || ||||| |||||||| Sbjct 3369312 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3369358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| | ||| || || || |||||| || || || ||| | || Sbjct 3368220 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368279 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 3368280 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368339 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 3368340 ATGCCCTCCTTGTC 3368353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| | ||| || || || |||||| || || || ||| | || Sbjct 3368448 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368507 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 3368508 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368567 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 3368568 ATGCCCTCCTTGTC 3368581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| | ||| || || || |||||| || || || ||| | || Sbjct 3368676 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368735 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 3368736 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368795 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 3368796 ATGCCCTCCTTGTC 3368809 >seq66 Length=4205697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| |||||| || || ||| ||||| || || ||||| ||||| Sbjct 1637519 CCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1637460 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || || || ||||| | ||| || || | |||| Sbjct 1637459 AGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1637400 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||| ||| | | | || | ||| ||| Sbjct 1637399 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 1637340 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| || || || || |||||||| Sbjct 1637339 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCAT 1637293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380811138121197