Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq158 136 7e-27 seq84 84.2 4e-11 >seq158 Length=1624924 Score = 136 bits (150), Expect = 7e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 177778 GTGTACTCCACAATCTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 177719 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 177718 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 177659 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 177658 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 177616 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || || ||||||||| | | ||||||||| |||||| |||||||||| Sbjct 180347 CCCTTGCTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 180288 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||||||||| ||||| || | | |||||| || Sbjct 180287 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGA 180228 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 |||| ||| | |||||| | | |||| | ||| | |||||||| ||||| || Sbjct 180227 GCCTGGGGGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACG 180168 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 || ||||||||||| | ||| | | |||| || Sbjct 180167 CCAATGCCGATGGGCCGGTGCCGCCGGTTGGA 180136 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||| ||||| | ||| | ||| ||||||||||||||| Sbjct 182345 CTGGAACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 182286 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| ||| ||||||||||| | | ||||| || Sbjct 182285 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAGGCT 182226 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 182225 GTTCCTGACACCGT 182212 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| || || |||||||||||||| | | | Sbjct 176528 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 176469 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || || || || || |||||||||||| |||||||||| Sbjct 176468 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 176409 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 176408 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 176378 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 184548 GTTCAGGGACTGGCTCTGGTCAATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 184489 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | | ||||||| ||||||||| |||||| ||| | || ||||| || || | | || Sbjct 184488 TTTTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAATCTCAGG 184429 Query 212816 GATGTTCTG 212824 ||||||||| Sbjct 184428 GATGTTCTG 184420 >seq84 Length=3383839 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 38965 GCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTAC 39024 ||||||| | |||||| |||||||||||||||| | |||||| ||||| | | ||| | Sbjct 1949452 GCTCCCAGCGGTTGGCAGAGAAGAGCAGGTGGATGGTGTGGTCCTCCAGGTTCTTCTCCC 1949393 Query 39025 TCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 | ||||||| |||||||||| || || || || |||||||| Sbjct 1949392 TGCCCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTCGTTCTGTC 1949347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931215624725760