Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq158 93.3 8e-14 >seq158 Length=1624924 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || |||||||| || || || || || Sbjct 176541 CTGGTTGGTTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTC 176482 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||| || || |||| ||| ||| |||| |||||||| ||||| Sbjct 176481 CCTGGCTCGCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 176422 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 176421 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 176378 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| |||| | ||||| || || ||||||||||| ||||||| Sbjct 177795 CCACCTCATCCTTGCTGGTGTACTCCACAATCTCGGTGCACAGGTTGCTGCATTTGATGG 177736 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 177735 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 177676 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 177675 TGCCAGTCTC 177666 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||| ||||| | ||| | ||| ||| | || ||||| Sbjct 182348 CACCTGGAACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 182289 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| ||||||||||| | | || || Sbjct 182288 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAG 182229 Query 221242 ACTGTT 221247 ||||| Sbjct 182228 GCTGTT 182223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928528539956160