Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq27 228 9e-55 seq102 134 2e-26 >seq27 Length=7367374 Score = 228 bits (252), Expect = 9e-55 Identities = 658/1004 (66%), Gaps = 10/1004 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | ||||||||| || || |||| |||| || || || ||| || Sbjct 3125664 AGATACAGAGCTTTGTGTCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACA 3125723 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || || | ||||| |||| |||| ||||||| || |||| Sbjct 3125724 TCAGTGTCAAACTTATTAGCAAATAAGTGGTG---GTTCCGTAGCATCCAGTTCAAGTCT 3125780 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 3125781 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCACGGTGGGTAGGGTGCA 3125840 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| || ||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 3125841 CCTTTGGACACATCGCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGGGCATTCATG 3125900 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || |||||| |||| || | || | || || || || || | || || | || Sbjct 3125901 TCAGAAACGTCGTACTTGT-CA-CTGGAAGAAAATGCGCCTGGGACTTCAGGGATTCTCT 3125958 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 3125959 GGATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACT 3126018 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| || || | || | ||| | || ||||| || | Sbjct 3126019 GAAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAACTCCTGCTAACTACAAAATAGG 3126078 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 3126079 CACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCT 3126138 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | | | | | || | ||||||||||| || || | |||| Sbjct 3126139 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTCACTTCTTTATAAACAGGCA 3126198 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || |||| ||||| |||| | || | ||| | | || || || || Sbjct 3126199 TTTTTTCTGTTTCTAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCT 3126258 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 ||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | | Sbjct 3126259 TGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAAC 3126318 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | ||| || || ||||||| ||||| ||||||||||| | |||||| ||||| | Sbjct 3126319 TTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCACGAAGCAT 3126378 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || |||||| | |||| | |||||| ||||| ||||| || || || ||| Sbjct 3126379 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATCCCCT 3126438 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | ||| || | || Sbjct 3126439 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTT 3126497 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || || ||||| | || || | || || | |||||| || || |||| | ||| Sbjct 3126498 TGTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACT 3126557 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 |||||||| || || ||||| || | || || ||| || | | | | ||| || Sbjct 3126558 ATAGAGTAAGCAATTGGAAATTCTGCTTCTTCATCACTGAGAGGTTCCATAATGTATTTC 3126617 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || || |||| || |||||||| ||||| Sbjct 3126618 CTAGTCTTGGTGAAGGAAGCACAGTCTGCAGTCATGTTAATATA 3126661 >seq102 Length=2881194 Score = 134 bits (148), Expect = 2e-26 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || || ||||| |||||||| |||| || || |||||| | Sbjct 222277 TGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGGGTCGAACT 222218 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || | |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 222217 TGTTGGCCAGGAGATGGTGT---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 222161 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| |||||||| | || || || || || Sbjct 222160 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTCATGT 222101 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 222100 CCCCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGTTGGA 222041 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | || | | ||||| | | || || ||||| ||||| || | ||||||||||||| Sbjct 222040 ACTTATCGCTGAGGGGCGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCACA 221981 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 || ||||| |||||||| ||||||| ||||| || | ||||| Sbjct 221980 CGTACTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 221936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577022664077640