Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq7 306 5e-78 seq66 187 3e-42 seq72 161 1e-34 seq214 98.7 1e-15 seq33 87.8 2e-12 >seq7 Length=16983252 Score = 306 bits (338), Expect = 5e-78 Identities = 1000/1534 (65%), Gaps = 31/1534 (2%) Strand=Plus/Minus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || || || || ||||| || || || || || || || || Sbjct 9604075 GTGGAGATCATCGCCAACGATCAGGGGAACCGCACCACACCCAGCTATGTGGCGTTCACC 9604016 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || ||||| ||| ||| |||||||| | ||| Sbjct 9604015 GATACGGAGCGGCTCATCGGGGATGCTGCCAAAAACCAGGTAGCAATGAACCCCACCAAC 9603956 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || || || || || || ||||||| | || | || || Sbjct 9603955 ACCATCTTTGATGCCAAACGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCA 9603896 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| ||| || || || || | ||||| | | | | Sbjct 9603895 GACATGAAGCACTGGCCTTTCCGTGTGGTGAA---TGAGGGAGGCAAGCCCAAGGTGCAG 9603839 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| |||| | ||| |||| ||||| || || |||||| | Sbjct 9603838 GTGGAGTACAAGGGGGAGATGAAA-ACTTTCTTCCCAGAAGAGATCAGCTCCATGGTGCT 9603780 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 || ||||||||||||| ||| || | | || |||| || ||| | |||| || Sbjct 9603779 GACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCA 9603721 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| ||| || || || ||||| || |||||||| | | | Sbjct 9603720 TCACAGTGCCAGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCA 9603661 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || ||||| || || || || || || || || ||| Sbjct 9603660 TCACAGGCCTCAA-TGTGATGCGTATCATCAACGAGCCCACTGCAGCCGCTATCGCGTAT 9603602 Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| | || | || || ||||| | |||||||| || || Sbjct 9603601 GGCCTGGACAAGAAAGGAACCCGGGCTGGGGAGAAGAATGTCCTCATCTTTGACCTGGGA 9603542 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || |||||||| | || | || || | ||| || || || |||||| | Sbjct 9603541 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCC 9603482 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || ||| | ||||| || || || || || | | || ||| Sbjct 9603481 ACAGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 9603422 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| ||||| || ||| |||| || | || | | Sbjct 9603421 GT-GGAAGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAG 9603363 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAAT 196128 ||||| | || || ||||| | || || || || ||| || | | || | | Sbjct 9603362 GCGGCTGCGCACAGCTTGTGAGAGGGCAAAGCGCACCCTCAGCTCCTCCACACAGGCCAG 9603303 Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACG 196188 |||||||||| || | ||||| || ||||||||||| || | || || ||||| || Sbjct 9603302 CATTGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACCTCCATCACTCGTGCCCG 9603243 Query 196189 TTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACT 196248 |||||| ||| | || |||| | || | |||| || || || | | || Sbjct 9603242 TTTTGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTCT 9603183 Query 196249 TCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308 ||||| || || | || ||| || | | || ||||| || ||||| || || || Sbjct 9603182 GCGTGATGCCAAACTCGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCTAC 9603123 Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAA 196368 ||| || || ||||| || || |||| ||||||||| |||||| | ||||| Sbjct 9603122 CCGCATCCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAATGGTAAAGAGCTCAACAA 9603063 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | |||||||| ||||| || || ||||||||||| || || || || ||||| |||| Sbjct 9603062 GAGCATCAACCCTGATGAGGCTGTGGCTTATGGTGCTGCAGTACAAGCAGCTAT--TCTC 9603005 Query 196429 AGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATC 196485 | | | ||||| | | ||||| || ||||| ||||| || ||||| | || | || Sbjct 9603004 ATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGCTGGATGTCACCCCTCTGTC 9602946 Query 196486 CCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTAT 196545 ||||| | || || || || || || |||||| | || | | || || || || Sbjct 9602945 TCTGGGCATCGAGACGGCTGGAGGAGTGATGACTGCTCTCATCAAGCGCAATACCACCAT 9602886 Query 196546 TCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATA 196604 || || || | || ||| | || || || || || || | || | || | Sbjct 9602885 CCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCCTGG 9602827 Query 196605 TTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTT 196661 | || || || || | |||| ||| || ||| ||||||| | | || || | | Sbjct 9602826 TGCAGGTGTACGAGGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCAAGT 9602770 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 | || | || || || || | |||||||| || || || ||||| | || || | Sbjct 9602769 TTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTTTTG 9602710 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | || || || ||||| || || ||||||| |||| ||||||| | || || Sbjct 9602709 ACATCGATGCCAATGGTATCCTGAACGTCAGCGCTGTGGACAAGAGCACGGGTAAGGAGA 9602650 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | ||||| || |||||||||||||| || || ||||| || ||||| || |||| Sbjct 9602649 ACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATTGACCGCATGG 9602590 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 | ||||| || || ||||||| | ||| || || Sbjct 9602589 TGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 9602556 >seq66 Length=4205697 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 1637521 ATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637580 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || ||||||||||| || || || ||| Sbjct 1637581 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637640 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || || ||||| |||||||| |||||||| |||| |||||| Sbjct 1637641 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637700 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| ||||| |||||||| || | || |||||||| Sbjct 1637701 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGGT 1637748 Score = 163 bits (180), Expect = 4e-35 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| ||||| || || |||||||| ||||| ||| | Sbjct 1637293 ATGCAGATCTTCGTTAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637352 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || ||||||||||||| ||||| ||||| |||||||| || || ||| Sbjct 1637353 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 1637412 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || || ||||| |||||||| |||||||| |||| |||||| Sbjct 1637413 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637472 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 | || || || || ||||| ||| | || || | || ||||||| ||||| Sbjct 1637473 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTCAGGGGTGGGATGCAA 1637526 >seq72 Length=3839329 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| | Sbjct 3369358 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3369299 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || ||||| |||||||| || |||||| Sbjct 3369298 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3369239 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || || || | || |||||| Sbjct 3369238 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTACAAC 3369179 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || || ||||| ||||| ||||| || || Sbjct 3369178 ATCCAGAAAGAGTCAACTCTGCACCTGGTGCT 3369147 Score = 158 bits (174), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 171864 GCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGA 171923 ||| ||||| ||||| ||| | ||||| || || ||| |||| || || ||| | || Sbjct 3368216 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368157 Query 171924 CACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCA 171983 ||| || || ||| | || |||||||| || || ||||| |||||||| || |||||||| Sbjct 3368156 CACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCA 3368097 Query 171984 ACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGT 172043 | || || |||||||| || ||||||||||| ||||| || || |||| |||||| | Sbjct 3368096 GAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGCACTCTGTCTGACTACAACAT 3368037 Query 172044 TCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || || ||||| ||||| ||||| || || | || ||||||| Sbjct 3368036 CCAGAAAGAGTCGACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3367992 Score = 149 bits (164), Expect = 8e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| ||||| || || ||||| || ||||| || | Sbjct 3369130 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGT 3369071 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||| || ||||||||||| || || || || ||| Sbjct 3369070 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAG 3369011 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || || ||||| ||||| || || ||||| | ||||| ||| Sbjct 3369010 CAGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGATTATAAC 3368951 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || ||||| ||||| ||||| || || | || ||||||| Sbjct 3368950 ATCCAGAAAGAGTCAACTCTTCACCTGGTGCTGCGCCTCAGGGGTGG 3368904 >seq214 Length=1065738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || |||||||| || || || |||| || || || || ||||| || || || | Sbjct 611321 ATGCTGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACCAAAGATG 611380 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | ||||| || || ||| || ||||| ||||| || || ||||| ||||| | Sbjct 611381 CTGGAACCATTGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 611440 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| ||||| ||||||||||| Sbjct 611441 TTGCCTATGGGCTGGACAAGAA 611462 >seq33 Length=6734157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| ||||||||| | || | ||| || || | | Sbjct 797842 AACAGCTGCTGCCATTGCTTATGGACTGGACAAG---AGAGAGGGAGAGAAGAACATCCT 797898 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | || || || || ||||| || |||||||| || || |||| ||||| || | Sbjct 797899 TGTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 797958 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| ||| || ||||| || ||||| ||||| || || Sbjct 797959 CTTTGAAGTTGTGGCTACTAATGGAGACACTCACCTGGGTGGAGAAGACTTTGA 798012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657638406076080