Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq72 114 1e-20 seq66 113 4e-20 seq203 87.8 2e-12 >seq72 Length=3839329 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 3369131 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAG 3369072 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 3369071 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCA 3369012 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| ||||| |||||||| || | | | | |||| |||||||| Sbjct 3369011 GCAGAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGATTATAA 3368952 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || ||| ||||| |||| Sbjct 3368951 CATCCAGAAAGAGTCAACTCTTCACCTGGTGCTGCG 3368916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 3369358 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3369299 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 3369298 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3369239 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | |||| || || ||| Sbjct 3369238 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTACAAC 3369179 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || ||| ||||| |||| Sbjct 3369178 ATCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCG 3369144 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 3367991 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 3367932 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || || |||||||| ||||| || || || || || || || Sbjct 3367931 TGACACCATTGAGGATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 3367872 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| || | | | |||| || || || Sbjct 3367871 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAA 3367812 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || |||| || ||| ||||| |||| Sbjct 3367811 CATCCAGAAAGAGGCGACTCTGCACCTGGTGCTGCG 3367776 >seq66 Length=4205697 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || || || || || ||| Sbjct 1637293 ATGCAGATCTTCGTTAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637352 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| || || || || || || || Sbjct 1637353 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 1637412 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || ||||| |||||||| ||| | | | |||| || || ||| Sbjct 1637413 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637472 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||||||||| |||| Sbjct 1637473 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCG 1637507 >seq203 Length=1195537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||| || || || || || || ||||| || | ||| | | ||| | Sbjct 1141968 ACCATGCAGATCTCCATGAAGACCCTCACGGGGAAAACCATCGCCCTCAAGGCTGAACCT 1141909 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || ||||| ||| | ||||||||| || || || || || |||| ||| Sbjct 1141908 TCTGATACTACAGAAAATGTAGACGCAAAGATCCAGGATAAGGAGGGCATCCCTCGGGAT 1141849 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTA 24879 || || | |||||||||| ||||| ||||||||||| | || | ||| |||| | | Sbjct 1141848 CAGCAGCAGCTGATCTTTGCTGGGAAGCAGCTGGAGGA-TGGACACACACTGTCCAACTG 1141790 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||| || | ||||| || || ||| ||| | || || Sbjct 1141789 CAACATCTAACAAGAATCCACCCTTCACCTGGGGCTGGGA 1141750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449744415490920