Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq66 138 7e-28 seq72 131 1e-25 >seq66 Length=4205697 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 1637519 CCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1637460 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || ||||||||||| | |||||||| | || Sbjct 1637459 AGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1637400 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || |||||| || || || | ||| ||| ||||| Sbjct 1637399 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 1637342 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| |||||||| || || |||||||| || ||||||||||| Sbjct 1637341 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCAT 1637293 Score = 138 bits (152), Expect = 7e-28 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||| | | |||||| ||||| | || ||||||||| ||||| ||||| Sbjct 1637750 TTACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCA 1637691 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || |||| ||||| ||||| || ||||||||||| | |||||||| | Sbjct 1637690 GACAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGA 1637631 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | || |||||||| | || || ||||| || || || | ||| ||| || Sbjct 1637630 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 1637573 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| |||| ||| |||||||| || || |||||||| |||||||| ||||| Sbjct 1637572 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 >seq72 Length=3839329 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| |||||||| | || ||| ||||| ||||| ||||| || Sbjct 3369132 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3369191 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||||| | || ||||| ||||| || || |||||||| | ||||| ||| | || Sbjct 3369192 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3369251 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || || || || || || | ||| ||| ||| | Sbjct 3369252 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 3369309 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 3369310 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3369359 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| |||||||| | || ||| ||||| ||||| ||||| || Sbjct 3367764 CCCCCCCTGAGGCGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGAC 3367823 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||||| | || ||||| ||||| || || |||||||| | |||||||| | || Sbjct 3367824 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 3367883 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || || || || || || | ||| ||| ||| | Sbjct 3367884 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATCCTCAATGGTGTCACTGGGCTCAA 3367941 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| |||||||| || || |||||||| || ||||||||||| Sbjct 3367942 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| |||||||||| || ||| ||||| |||||||| || || Sbjct 3368904 CCACCCCTGAGGCGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGAC 3368963 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || || |||||||| | |||||||| | || Sbjct 3368964 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3369023 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||| ||||| || | || || || || || || || | ||| ||| || | Sbjct 3369024 ATCCCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGTTCCA 3369081 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || || |||||||| || ||||||||||| Sbjct 3369082 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| ||||||| | || ||| ||||| |||||||| | || Sbjct 3368220 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368279 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || || |||||||| | ||||| ||| | || Sbjct 3368280 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368339 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | ||| || |||||| Sbjct 3368340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACT 3368399 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 || | || |||||||| || || | |||||| || ||||||||| Sbjct 3368400 TCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| ||||||| | || ||| ||||| |||||||| | || Sbjct 3368448 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368507 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || || |||||||| | ||||| ||| | || Sbjct 3368508 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368567 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | ||| || |||||| Sbjct 3368568 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACT 3368627 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 || | || |||||||| || || | |||||| || ||||||||| Sbjct 3368628 TCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| ||||||| | || ||| ||||| |||||||| | || Sbjct 3368676 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368735 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || || |||||||| | ||||| ||| | || Sbjct 3368736 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368795 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | ||| || |||||| Sbjct 3368796 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACT 3368855 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 || | || |||||||| || || | |||||| || ||||||||| Sbjct 3368856 TCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| |||||||| | || ||| ||||| ||||| ||||| || Sbjct 3367992 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 3368051 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || || || ||||| || || |||||||| | ||||| ||| | || Sbjct 3368052 AGAGTGCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368111 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | ||| || |||||| Sbjct 3368112 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACT 3368171 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 || | || |||||||| || || | |||||| || ||||||||| Sbjct 3368172 TCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325584678030941