Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq66 131 1e-25 seq72 104 2e-17 >seq66 Length=4205697 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||||||||| || || ||||||||||| || ||||| || || | Sbjct 1637519 CCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1637460 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || || || | |||| || ||||| || || ||| Sbjct 1637459 AGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1637400 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || ||||||| | || | |||||| | || || Sbjct 1637399 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 1637340 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||| | ||| ||||| || ||||||||||| Sbjct 1637339 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCATTTT 1637290 >seq72 Length=3839329 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||| ||||| || || ||||| || ||||||||||| | Sbjct 3368904 CCACCCCTGAGGCGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGAC 3368963 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || || || ||| | |||| || ||||| || || || Sbjct 3368964 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3369023 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || ||| | || | |||||| |||| || Sbjct 3369024 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACC 3369083 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| | ||| || || || |||||||| Sbjct 3369084 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385091316735699