Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq72 131 2e-25 seq66 125 7e-24 seq158 114 1e-20 >seq72 Length=3839329 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || || |||||| || ||| | ||| || |||||||| ||| Sbjct 3368934 GTTGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCC 3368993 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| |||||||| |||||||| || |||||| ||| Sbjct 3368994 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 3369053 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||| ||||| || | |||| ||| ||||| ||||| || Sbjct 3369054 ACATTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 3369113 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3369114 TTCACGAAGATCTGCAT 3369130 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| ||| || ||| | ||| || ||||||||||| Sbjct 3369162 GTTGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCA 3369221 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 3369222 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 3369281 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3369282 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 3369341 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 3369342 TTCACAAAGATCTGCATG 3369359 Score = 125 bits (138), Expect = 7e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||||||||| || ||||| || || ||| | ||| || ||||||||||| || | Sbjct 3367799 CTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 3367858 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 || |||| ||||||||| || || ||||| |||||||| |||||| ||| | | Sbjct 3367859 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATC 3367918 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || || || Sbjct 3367919 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3367978 Query 133649 GAAAATCTGCAT 133660 ||| |||||||| Sbjct 3367979 GAAGATCTGCAT 3367990 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || || ||| ||| || ||||||||||| Sbjct 3368022 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCAAGCTGCTTGCCA 3368081 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 3368082 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 3368141 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| |||||| || || | || || ||| ||||| |||| || Sbjct 3368142 ACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCAGTCAAGGTC 3368201 Query 133644 TTTACGAAAATCTGC 133658 || ||||| |||||| Sbjct 3368202 TTCACGAAGATCTGC 3368216 >seq66 Length=4205697 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || | | | || || |||||||| || Sbjct 1637717 GTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTCCC 1637659 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| |||||||||||||||||||| |||||| ||| Sbjct 1637658 TGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 1637599 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1637598 GACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 1637539 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 1637538 CTTCACAAAGATTTGCAT 1637521 >seq158 Length=1624924 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||| | | ||||||| || ||||||| |||||| |||||||||||||| ||| Sbjct 177791 CTCATCCTTGCTGGTGTACTCCACAATCTCGGTGCACAGGTTGCTGCATTTGATGGTGCC 177732 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| || |||||||| |||||||| | ||||||||| |||||||| || ||| Sbjct 177731 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 177672 Query 148970 AGTTTC 148975 ||| || Sbjct 177671 AGTCTC 177666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||| ||| | | ||| || || ||| || ||||| || ||||| ||||| || || Sbjct 180330 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 180271 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 |||||||| || ||||| || ||| |||||| ||| ||| ||| ||| | Sbjct 180270 CCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGAGCCTGGGGGCTCTCGAA 180211 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | | || | | | || ||||| || |||||||| ||||| | ||| |||||||| Sbjct 180210 GGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCAATGCCGATGGGCCG 180151 Query 148679 GTG 148681 ||| Sbjct 180150 GTG 180148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483256201260360