Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq27 167 3e-36 seq102 120 4e-22 >seq27 Length=7367374 Score = 167 bits (184), Expect = 3e-36 Identities = 574/886 (65%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || || | ||| || |||| | ||||| || | || || | Sbjct 3125730 TCAAACTTATTAGCAAATAAGTGGTG---GTTCCGTAGCATCCAGTTCAAGTCTCCTACT 3125786 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || | ||| || || |||||||| || || | || || | | Sbjct 3125787 CCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTG 3125846 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 3125847 GACACATCGCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGGGCATTCATGTCAGAA 3125906 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||||||||||| |||| || | | || || || || | || | |||||| | || Sbjct 3125907 ACGTCGTACTTGT-CACTGGAAGAAAATGCGCCTGGGACTTCAGGGATTCTCTGGATTGT 3125965 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC-----TCC 162414 |||||||||| || ||||| || || || || |||| |||||| |||||| | Sbjct 3125966 TGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACTGAAGTAT 3126025 Query 162415 CTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474 | | ||||| | ||| | | | || | || |||| | || | ||| || || Sbjct 3126026 TTTGCTGTTTTCTAGTACATATTCTACAAAAC-----TCCTGCTAACTACAAAATAGGCA 3126080 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 || |||||||| || || | | | ||| || | | ||||||| || ||||| | Sbjct 3126081 CTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTT 3126140 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | || || | | | | || ||| ||||||| || ||| | || || || Sbjct 3126141 ATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCT---CA-CTTCTTTATAAACAGG 3126196 Query 162595 ----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650 | ||| || |||| ||||| |||| | ||| || | | || || || Sbjct 3126197 CATTTTTTCTGTTTCTAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTC 3126256 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 |||||||| | |||||||| | || || || || || | |||||||| || Sbjct 3126257 CTTGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGA 3126316 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 || || || ||||| | | ||||| | || ||||| || | |||||||| || Sbjct 3126317 ACTTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCACGAAGC 3126376 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 || || || ||||| ||| ||| | ||||||||| || ||||| || |||||||| Sbjct 3126377 ATATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATCCC 3126436 Query 162831 CATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888 | |||| | ||| | || || | |||| | ||||| || | |||||| | | Sbjct 3126437 CTTCACAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGAATGCAGTAAAAA 3126494 Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948 || || || || ||||| | || || | ||| || | |||||| || || || | ||| Sbjct 3126495 TTTTGTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACC 3126554 Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || ||||| || || || || || || || || || |||||||| Sbjct 3126555 ACTATAGAGTAAGCAATTGGAAATTCTGCTTCTTCATCACTGAGAG 3126600 >seq102 Length=2881194 Score = 120 bits (132), Expect = 4e-22 Identities = 244/357 (68%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 ||||| ||||| |||||||| | ||| ||||||||||||||| || || | || Sbjct 221711 CGCACTATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAG 221652 Query 162700 TTCCACTTAACGCTGAG-TCCGTAC-AGATCCTGTAGACAGTTCAGATCGGCCTGGACGC 162757 ||| | | | | | || | | || ||||| | ||||| || |||||||| || | Sbjct 221651 CGCCA--TGGCACAGGGCTCTGCAGGAGGTCCTGCATGCAGTTGAGGTCGGCCTGCACCC 221594 Query 162758 GACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAAC 162817 | ||| || || || || ||||| || | | |||| || ||||||||| ||| | Sbjct 221593 GGGACCAGGAGGCATAGACCACGCTTTCTAGGCGGCTGGCCACGAAGACATTGGGGAAGC 221534 Query 162818 ACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTG 162875 | | | | || || |||||||| ||| || | || | ||| || ||||| || Sbjct 221533 AGGCAGCAATGGCCCTCACGGCCTCCTGGAAGGCAGCCGGG--GATTTGCTGTCTACATG 221476 Query 162876 TACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTAT 162935 |||||||| | ||||| || ||||||| || || ||| | | ||| ||||| || || Sbjct 221475 GACGCAGTAAACGTTCTGGGGAGCGTAGACGGACCGCAGGAGCCGCTCAAACATGTCGAT 221416 Query 162936 CTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || ||||| | | || || || || ||||||||||| ||||||| | ||||| Sbjct 221415 TTTGTGGTGGATGATCATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTGAG 221359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578235051134400