Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq72 102 2e-16 seq66 86.0 1e-11 >seq72 Length=3839329 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| |||| |||||| |||||| |||| Sbjct 3369115 AAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGAGAAT 3369056 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 3369055 GTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAGCAGAGGCTGATCTTT 3368996 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||| || | || || ||||||| ||| ||||||||||||| Sbjct 3368995 GCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGATTATAACATCCAGAAAGAGTCA 3368936 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 3368935 ACTCTTCACCTGGT 3368922 >seq66 Length=4205697 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||| ||||||| || ||||||| || || | ||||||||| Sbjct 1637729 ACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 1637670 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 1637669 AGCTGCTTCCCTGCGAAGATCAGCC 1637645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181408344910119