Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq72 134 1e-26 seq66 107 2e-18 >seq72 Length=3839329 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||| ||||||| || ||| ||| |||| ||||||||||| |||||||| Sbjct 3368939 CTCTTTCTGGATGTTATAATCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAA 3368998 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | | ||||| ||| |||||| ||||| | | Sbjct 3368999 GATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 3369058 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| || || || |||| || ||||| Sbjct 3369059 CTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3369118 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3369119 GAAGATCTGCAT 3369130 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || || ||| |||| ||||||||||| || ||||| Sbjct 3369167 CTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 3369226 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||||| | | Sbjct 3369227 GATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 3369286 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 3369287 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3369346 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 3369347 AAAGATCTGCAT 3369358 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 3367799 CTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 3367858 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||||||| |||||| ||||| | Sbjct 3367859 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATC 3367918 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 3367919 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3367978 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3367979 GAAGATCTGCAT 3367990 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||| ||| ||| || ||| ||| |||| ||||||||||| |||||||| Sbjct 3368255 CTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAA 3368314 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||||| | Sbjct 3368315 GATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 3368374 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || || |||| | ||| || || || ||||| || ||||| Sbjct 3368375 CTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCAC 3368434 Query 35725 AAATATCTGC 35734 || |||||| Sbjct 3368435 GAAGATCTGC 3368444 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||| ||| ||| || ||| ||| |||| ||||||||||| |||||||| Sbjct 3368483 CTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAA 3368542 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||||| | Sbjct 3368543 GATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 3368602 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || || |||| | ||| || || || ||||| || ||||| Sbjct 3368603 CTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCAC 3368662 Query 35725 AAATATCTGC 35734 || |||||| Sbjct 3368663 GAAGATCTGC 3368672 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||| ||| ||| || ||| ||| |||| ||||||||||| |||||||| Sbjct 3368711 CTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAA 3368770 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||||| | Sbjct 3368771 GATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 3368830 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || || |||| | ||| || || || ||||| || ||||| Sbjct 3368831 CTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCAC 3368890 Query 35725 AAATATCTGC 35734 || |||||| Sbjct 3368891 GAAGATCTGC 3368900 >seq66 Length=4205697 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 1637712 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAA 1637653 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 1637652 GATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1637593 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 1637592 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1637533 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1637532 AAAGATTTGCAT 1637521 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 1637483 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAG 1637424 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||||||| |||||| || | | | Sbjct 1637423 ATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTC 1637364 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 1637363 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACG 1637304 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 1637303 AAGATCTGCATT 1637292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450640110414120