Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq22 104 2e-17 seq57 89.7 4e-13 >seq9 Length=14393062 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 1407293 TGATGGCTTTGCCGCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 1407234 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || |||||||||||||| || || ||||| || || | Sbjct 1407233 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCA 1407174 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 1407173 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 1407137 >seq22 Length=8423346 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | |||| || || ||||| ||||| || || |||||||| |||||| Sbjct 6657786 CAAGAAGTGCAAATCACAGAGGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 6657727 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| ||||||||||||||||| || || || ||||| || || Sbjct 6657726 ATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACATTAAGGA 6657680 >seq57 Length=5062550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 2138063 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 2138004 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || |||||||||| ||||| || || ||||| | || || | ||| Sbjct 2138003 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 2137944 Query 44255 GA 44256 || Sbjct 2137943 GA 2137942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397324054420195