Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 183 9e-41 seq72 134 4e-26 seq214 102 2e-16 seq33 95.1 4e-14 seq22 89.7 2e-12 seq203 87.8 5e-12 >seq7 Length=16983252 Score = 183 bits (202), Expect = 9e-41 Identities = 718/1115 (64%), Gaps = 18/1115 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGG-TGAAACAGTAACTGATGCTGTTATTAC 349620 || |||||||| |||||||| || ||| | || || || || ||||||| || || Sbjct 9603775 AAGATGAAGGAGATTGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCATCAC 9603717 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || ||||| || || ||||| ||||||| || || || || || |||| ||| | Sbjct 9603716 AGTGCCAGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCATCAC 9603657 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | ||||| | | || || || || |||||||| || || || || ||||| || Sbjct 9603656 AGGCCTCAATGTGATGCGTATCATCAACGAGCCCACTGCAGCCGCTATCGCGTATGGCCT 9603597 Query 349741 TGATAA--AATGA----GTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | || || ||| | || || ||||| | || || || Sbjct 9603596 GGACAAGAAAGGAACCCGGGCTGGGGAGAAGAATGTCCTCATCTTTGACCTGGGAGGGGG 9603537 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||||| ||||| || | || || | || || || |||||||| || || | || || Sbjct 9603536 CACTTTCGATGTCTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCCACAGC 9603477 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||| || ||| | ||||| || || ||||| || || | || || ||||| | Sbjct 9603476 TGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGA 9603417 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCC 349973 |||||| ||||| ||||| ||| ||| |||| | || |||| || | || | Sbjct 9603416 AGAATTCAAGCG-CAAGCATAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGCGGC 9603358 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA--CCTCTAT 350031 | | || || ||||| | || ||||| || | || || || | || | || || Sbjct 9603357 TGCGCACAGCTTGTGAGAGGGCAAAGCGCACCCT--CAGCTCCTCCACACAGGCCAGCAT 9603300 Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 ||| ||||| ||||| ||| |||| || |||| | || || || ||||| || || Sbjct 9603299 TGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACCTCCATCACTCGTGCCCGTTT 9603240 Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 ||| || | | || ||||| | | || |||| || ||||| || | | Sbjct 9603239 TGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTCTGCG 9603180 Query 350152 AGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACG 350211 ||||| ||| | ||| ||||| | || | || | || ||||| ||||| || Sbjct 9603179 TGATGCCAAACTCGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCTACCCG 9603120 Query 350212 TATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGAT 350270 || || || | || || | || || || || ||||| ||||| | | | ||| Sbjct 9603119 CATCCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAATGGTAAAGAGCTCAACAAGAG 9603060 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 || | || || ||||| ||||| || ||||||||||| || || ||| ||||| | | Sbjct 9603059 CA-TCAACCCTGATGAGGCTGTGGCTTATGGTGCTGCAGTACAAGCAGCTATTCTCATGG 9603001 Query 350331 GAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTG 350390 || | ||| | || | | ||||| | || || ||||| || || || || || | Sbjct 9603000 GAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGCTGGATGTCACCCCTCTGTCTCTGG 9602941 Query 350391 GATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTA 350450 | | || || |||| | ||| ||||||| ||| || | |||| || | || | Sbjct 9602940 GCATCGAGACGGCTGGAGGAGTGATGACTGCTCTCATCAAGCGCAATACCACCATCCCCA 9602881 Query 350451 CAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG-CCAGCGGTAACAATTCAA 350509 | ||| | | || || || | || | |||| || ||| |||| || | || Sbjct 9602880 CCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCAGC-GTCCTGGTGCAG 9602822 Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569 || | || ||||| | ||| || | ||||| || || || | ||| |||| Sbjct 9602821 GTGTACGAGGGTGAGAGGGCTATGACAAGGGATAACAACTTGCTGGGCAAGTTTGACCTA 9602762 Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629 | | || || ||| || || ||||| || ||||| || ||| |||| || || ||| Sbjct 9602761 ACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTTTTGACATCGAT 9602702 Query 350630 TCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 | |||||||| | || || | ||| || || || Sbjct 9602701 GCCAATGGTATCCTGAACGTCAGCGCTGTGGACAA 9602667 >seq72 Length=3839329 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| |||||||| || || || || || || | || ||||| ||| Sbjct 3369147 AGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 3369206 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| || || || ||| Sbjct 3369207 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3369266 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 3369267 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 3369326 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 3369327 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3369358 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| | |||||| || || || || ||||| | || ||||| ||| Sbjct 3367779 AGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 3367838 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| || || || ||| Sbjct 3367839 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 3367898 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || |||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 3367899 TGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 3367958 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 3367959 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| |||||||| || || || || ||||| | || || || ||| Sbjct 3368007 AGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCT 3368066 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| || | |||||||| || ||||| || || || ||| Sbjct 3368067 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3368126 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| || || ||||| || | | ||| Sbjct 3368127 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTC 3368186 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || | || || || || |||||| Sbjct 3368187 TTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 >seq214 Length=1065738 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||| ||||||||||| || || ||||||| || || ||||||| Sbjct 611321 ATGCTGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACCAAAGATG 611380 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | || || || ||||| || || || ||||| || || || | Sbjct 611381 CTGGAACCATTGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 611440 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||||| || || Sbjct 611441 TTGCCTATGGGCTGGACAA 611459 >seq33 Length=6734157 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 797843 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 797899 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 797900 GTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 797959 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||| || || || || ||||||||||| ||||| Sbjct 797960 TTTGAAGTTGTGGCTACTAATGGAGACACTCACCTGGGTGGAGAAGACTTTGA 798012 >seq22 Length=8423346 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 6656049 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 6656108 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| ||| |||| Sbjct 6656109 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 6656168 Query 223839 ACGCTACTA 223847 | || |||| Sbjct 6656169 AGGCCACTA 6656177 >seq203 Length=1195537 Score = 87.8 bits (96), Expect = 5e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | || || | || ||||| || || |||| || || || | | || Sbjct 1141738 ACCACCACAAAGTCCCAGCCCCAGGTGAAGGGTGGATTCTTGTTAGATGTTGCAGTTGGA 1141797 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||| | ||||| || || || || ||||||||||| || | |||||||| |||| Sbjct 1141798 CAGTGTGTGTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCTGCTGCTGATCCCGAGG 1141857 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || |||||||| || || || | |||||| || | | |||||| |||||| Sbjct 1141858 GATGCCCTCCTTATCCTGGATCTTTGCGTCTACATTTTCTGTAGTATCAGAAGGTTCA 1141915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514725576687917