Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq66 170 2e-37 seq72 167 3e-36 seq158 114 1e-20 >seq66 Length=4205697 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 1637521 ATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1637580 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || || ||||| |||||| Sbjct 1637581 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637640 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| |||||||| | ||||| || Sbjct 1637641 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1637700 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||| || | ||||| Sbjct 1637701 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1637747 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || |||||||| ||| | | Sbjct 1637292 AATGCAGATCTTCGTTAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1637351 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | || || || || || ||||||||||| ||||| || ||||| Sbjct 1637352 TGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCA 1637411 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| || || |||| |||||||| | ||||| || Sbjct 1637412 GCAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1637471 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || | || |||| || | ||||| Sbjct 1637472 CATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTCAGGGGTGG 1637519 >seq72 Length=3839329 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 3369358 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3369299 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 3369298 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3369239 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || || || | ||||| || Sbjct 3369238 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTACAAC 3369179 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || ||||| || || || |||| || | ||||| Sbjct 3369178 ATCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3369132 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||||||| | || Sbjct 3367990 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3367931 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 3367930 GACACCATTGAGGATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 3367871 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || || || | ||||| || Sbjct 3367870 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 3367811 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || | ||||| || || || |||| || Sbjct 3367810 ATCCAGAAAGAGGCGACTCTGCACCTGGTGCTGCGCCT 3367773 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| ||||| || ||||| | || |||||||| || | || || || ||| | |||| Sbjct 3368216 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368157 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||||| || ||||||| || || |||||||||||||| ||||| ||||| ||||| Sbjct 3368156 CACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCA 3368097 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | | || || |||||||| ||||| || || || | || || || | ||||| || | Sbjct 3368096 GAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGCACTCTGTCTGACTACAACAT 3368037 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || ||||| || || || |||| || | ||||| Sbjct 3368036 CCAGAAAGAGTCGACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3367992 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| ||||| || ||||| | || |||||||| || | || || || ||| | |||| Sbjct 3368444 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368385 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||||| || ||||||| || || |||||||||||||| ||||| ||||| ||||| Sbjct 3368384 CACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCA 3368325 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | | || || ||||| || ||||| || || || | || ||||| | | ||||| | Sbjct 3368324 GAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGTTTATAACAT 3368265 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || | ||||| || || | |||| || | ||||| Sbjct 3368264 CCAGAAAGAGGCGACTCTGCACCTGGCGCTGCGCCTCAGGGGTGG 3368220 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| ||||| || ||||| | || |||||||| || | || || || ||| | |||| Sbjct 3368672 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368613 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||||| || ||||||| || || |||||||||||||| ||||| ||||| ||||| Sbjct 3368612 CACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCA 3368553 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | | || || ||||| || ||||| || || || | || ||||| | | ||||| | Sbjct 3368552 GAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGTTTATAACAT 3368493 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || | ||||| || || | |||| || | ||||| Sbjct 3368492 CCAGAAAGAGGCGACTCTGCACCTGGCGCTGCGCCTCAGGGGTGG 3368448 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| ||||| || ||||| | || |||||||| || | || || || ||| | |||| Sbjct 3368900 GCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCCCCCTGGAAGTCGAGCCCCGTGA 3368841 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||||| || ||||||| || || |||||||||||||| ||||| ||||| ||||| Sbjct 3368840 CACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCA 3368781 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | | || || ||||| || ||||| || || || | || ||||| | | ||||| | Sbjct 3368780 GAGGCTGATCTTTGCGGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGTTTATAACAT 3368721 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || | ||||| || || | |||| || | ||||| Sbjct 3368720 CCAGAAAGAGGCGACTCTGCACCTGGCGCTGCGCCTCAGGGGTGG 3368676 >seq158 Length=1624924 Score = 114 bits (126), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACT 80629 |||| || ||| | | || ||||| ||||||| | | ||||||||||||| | || Sbjct 180337 CCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 180278 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 ||| ||||| ||| || ||| |||||||| | || ||| | | ||||| | Sbjct 180277 CCA---GGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGAGCCTGGG 180221 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 || ||||| | || | ||||| ||||| |||||||||||||||| ||||| ||| Sbjct 180220 GGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCAATGC 180161 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| || ||||| ||| ||| || |||||||||| ||| Sbjct 180160 CGATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 180121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570116216437680