Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq102 275 8e-69 >seq102 Length=2881194 Score = 275 bits (304), Expect = 8e-69 Identities = 669/1001 (67%), Gaps = 18/1001 (2%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||| ||| || ||| |||||| | | | || | | Sbjct 221285 CGCCCGGCGAGTACCTGAACATTACGAGGGATTGCAGAGCCTTCAAGGAGACCCGGCGCT 221344 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | || || |||| ||| |||| ||||| |||||||||||||| || | | Sbjct 221345 ACATCGAGTTCCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCA 221404 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 |||||||||| ||||| ||||| ||||| |||||| || || ||||||| || |||||| Sbjct 221405 TCCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACGCTCCCCAGAACG 221464 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 | ||||||||||| || ||| ||| ||| | | ||| || ||| ||||| Sbjct 221465 TTTACTGCGTCCATGTAGACAGCAAATCCCCGGCTGCCTTCCAGGAGGCCGTGAGGGCCA 221524 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 | || |||||||| || || | ||||| ||| || | |||||| || | || Sbjct 221525 TTGCTGCCTGCTTCCCCAATGTCTTCGTGGCCAGCCGCCTAGAAAGCGTGGTCTATGCCT 221584 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || |||||||||||||||| ||||||| |||||| ||| || Sbjct 221585 CCTGGTCCCGGGTGCAGGCCGACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCTGTGC 221644 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 ||| | ||||| ||||| ||||| | |||||||| ||||||||||| |||| Sbjct 221645 CATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGA 221704 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCATGCCC 14078 | |||||||||||| || ||| ||| ||||| || ||||| |||| ||| | | Sbjct 221705 TAGTGCGGGCGCTGCAGCTGCTGCAGGGCCAGAACACCATGGAGTCCGAGAGGCCT-TCG 221763 Query 14079 AACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTC 14138 | ||||| ||| ||| | | |||| |||| | || | | | || Sbjct 221764 GCCGCCAAGCAGCAGCGCTGGGAGTATCACCACGAGGTG----GGGGAGACCATCT-CTC 221818 Query 14139 AACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCT 14198 ||| | ||| || || || || | ||| |||||| || |||| | ||| Sbjct 221819 -GCACTTCCCAGAAGAAACTGCCCCCACCCCACAGCTACCCCATGTTCACGGGCAGCGCC 221877 Query 14199 TACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC-- 14256 ||| || ||||| ||||| |||||| | | || ||||| || || || | Sbjct 221878 TACAACGCCGTCACACGGGACTTCGTGCGGTACATCTTCAAGAAC---CCCACCGCACAA 221934 Query 14257 -TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTG 14315 | || | | |||| | |||||| |||||||| |||||| || ||||||||||| || Sbjct 221935 AAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGTACGTGTGGGCCACCCTG 221994 Query 14316 CAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGA 14374 | | ||| |||| |||||||| | || ||| || |||| | | |||||| Sbjct 221995 AACCGCATG-CCGGGCGTGCCGGGGGGCACGCCCCTCAGCGATAAGTTCCAACTCTCGGA 222053 Query 14375 CATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGG 14434 |||| ||| | | | ||||||||| | ||| |||||||| || | || || Sbjct 222054 CATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATGAGCAAGGG 222113 Query 14435 GGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGG 14494 || | |||||||| ||| |||| |||| | | |||||||||||| |||| || Sbjct 222114 CGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTGGG 222173 Query 14495 CGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGA 14553 ||||||| ||| || | ||| | | || || | ||||||||||||||| |||| Sbjct 222174 CGACGTGCCCTGGATGCTGCAGCAACAC-CATCTCCTGGCCAACAAGTTCGACCCCGAGG 222232 Query 14554 CGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 |||||| ||||| | ||||| || ||| || ||||| Sbjct 222233 TGGACGATGCGGCCGTCCAGTGTCTCGAGGAGTACCTGCGC 222273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658514907536640