Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9 102 7e-17 seq63 98.7 8e-16 >seq9 Length=14393062 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | ||||||||| Sbjct 1407131 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 1407190 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || ||||| || | ||||||||| | || || ||| | Sbjct 1407191 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 1407250 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||| |||| | |||| Sbjct 1407251 ACATAGAACTGGCAAAGGGCATGGCATGGCGGCAAAGCCAT 1407291 >seq63 Length=4559448 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 3263 CGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTGGTGTTATGTGT 3322 ||||||||||| |||||||| | ||||| || ||||| |||||||| ||||| ||||| Sbjct 5466 CGAGATGGGGTTAACTGGGGCAGAATTGTGGCCTTCTTCGAGTTTGGCGGTGTGATGTGC 5525 Query 3323 GTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCCGCGTGGATGACA 3382 ||||| |||||||| | | || | |||||| |||| ||| || || |||||||| Sbjct 5526 GTGGAGAGCGTCAACCGGGAGATGTCTCACCTCGTGGACAGCATCGCTGCCTGGATGACC 5585 Query 3383 GA 3384 || Sbjct 5586 GA 5587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414339203934796