Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq72 185 2e-41 seq66 176 1e-38 seq203 107 4e-18 >seq72 Length=3839329 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||||||||| |||||||| |||||||||||||| | ||||| | || ||| Sbjct 3368919 AGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGCCCGTCT 3368978 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || ||||||||||| | |||||||| ||| Sbjct 3368979 TCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCC 3369038 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | ||| ||||| |||||||| ||| Sbjct 3369039 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTC 3369098 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3369099 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| |||||||| |||||||| || || | || || | || ||| Sbjct 3369147 AGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 3369206 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| || ||||||||| Sbjct 3369207 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3369266 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 3369267 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 3369326 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 3369327 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3369361 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| | |||||| |||||||| || || | || || | || ||| Sbjct 3367779 AGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 3367838 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||||||| Sbjct 3367839 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 3367898 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| | || ||||||||| | |||||||| || ||||| ||| Sbjct 3367899 TGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 3367958 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3367959 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| |||||||| |||||||| || || | || || | ||| ||| Sbjct 3368007 AGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCT 3368066 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || || || || |||| || ||||||||| Sbjct 3368067 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3368126 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | || || || || | ||| ||| Sbjct 3368127 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTC 3368186 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || || || | ||||| || || | |||| Sbjct 3368187 TTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| ||||| | |||||| |||||||||||| | | ||||| | || ||||||||| Sbjct 3368241 AGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGC 3368300 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| || | || || || || |||| || ||||||||||||||| Sbjct 3368301 TGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATC 3368360 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || |||||||| || ||||||||| | || || || || | ||| ||||| || Sbjct 3368361 TTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCA 3368420 Query 211089 GTGAGAGTCTTTACAAACACCTGC 211112 || | ||||| || || | |||| Sbjct 3368421 GTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| ||||| | |||||| |||||||||||| | | ||||| | || ||||||||| Sbjct 3368469 AGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGC 3368528 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| || | || || || || |||| || ||||||||||||||| Sbjct 3368529 TGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATC 3368588 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || |||||||| || ||||||||| | || || || || | ||| ||||| || Sbjct 3368589 TTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCA 3368648 Query 211089 GTGAGAGTCTTTACAAACACCTGC 211112 || | ||||| || || | |||| Sbjct 3368649 GTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| ||||| | |||||| |||||||||||| | | ||||| | || ||||||||| Sbjct 3368697 AGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGC 3368756 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| || | || || || || |||| || ||||||||||||||| Sbjct 3368757 TGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATC 3368816 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || |||||||| || ||||||||| | || || || || | ||| ||||| || Sbjct 3368817 TTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCA 3368876 Query 211089 GTGAGAGTCTTTACAAACACCTGC 211112 || | ||||| || || | |||| Sbjct 3368877 GTCAAGGTCTTCACGAAGATCTGC 3368900 >seq66 Length=4205697 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || |||||||| || || | ||||| | |||||| Sbjct 1637732 AGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1637673 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| ||||||||||| || | || ||||||||||| | |||||||||||| Sbjct 1637672 TCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 1637613 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 1637612 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 1637553 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 1637552 TTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1637504 AGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1637445 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| ||||||||||| || | || |||||||| |||| || |||||||| Sbjct 1637444 TCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCT 1637385 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || ||||||||| | || ||||| || ||||| ||| Sbjct 1637384 TGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 1637325 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | ||||||||| Sbjct 1637324 TTGCCAGTCAGGGTCTTAACGAAGATCTGCATTTT 1637290 >seq203 Length=1195537 Score = 107 bits (118), Expect = 4e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || ||||| || | |||||||| ||||| |||| || |||||| | | | || || Sbjct 1141744 ACAAAGTCCCAGCCCCAGGTGAAGGGTGGATTCTTGTTAGATGTTGCAGTTGGACAGTGT 1141803 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||| ||||||||||| || || ||||| || | || || || |||| | || Sbjct 1141804 GTGTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCTGCTGCTGATCCCGAGGGATGCC 1141863 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| |||||||||||| | || ||||| | || ||||| |||| ||| ||| Sbjct 1141864 CTCCTTATCCTGGATCTTTGCGTCTACATTTTCTGTAGTATCAGAAGGTTCAGCCTTGAG 1141923 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTT 211099 | ||| || || |||||||| ||||| Sbjct 1141924 GGCGATGGTTTTCCCCGTGAGGGTCTT 1141950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158747456314235