Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq72 145 2e-29 seq66 141 2e-28 >seq72 Length=3839329 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| ||||| || ||||| |||| || ||||||| || || | ||| || Sbjct 3368918 CAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGCCCGTC 3368977 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| || | || ||||| || || || |||||||| || Sbjct 3368978 TTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATC 3369037 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || |||||| || | ||||| || Sbjct 3369038 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGT 3369097 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 3369098 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| ||||| | ||||| |||| || ||| ||| || || | ||| ||||| ||| Sbjct 3368241 AGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGC 3368300 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||||||| || ||||| || | || || || || ||||| || |||||||| |||||| Sbjct 3368301 TGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATC 3368360 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| || |||||||| || || || || | | ||| |||||||| Sbjct 3368361 TTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCA 3368420 Query 225688 GTCAAAGTTTTTATGAA 225704 ||||| || || | ||| Sbjct 3368421 GTCAAGGTCTTCACGAA 3368437 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| ||||| | ||||| |||| || ||| ||| || || | ||| ||||| ||| Sbjct 3368469 AGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGC 3368528 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||||||| || ||||| || | || || || || ||||| || |||||||| |||||| Sbjct 3368529 TGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATC 3368588 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| || |||||||| || || || || | | ||| |||||||| Sbjct 3368589 TTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCA 3368648 Query 225688 GTCAAAGTTTTTATGAA 225704 ||||| || || | ||| Sbjct 3368649 GTCAAGGTCTTCACGAA 3368665 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| ||||| | ||||| |||| || ||| ||| || || | ||| ||||| ||| Sbjct 3368697 AGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGTGCGCCCGTCTTCCAGC 3368756 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||||||| || ||||| || | || || || || ||||| || |||||||| |||||| Sbjct 3368757 TGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATC 3368816 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| || |||||||| || || || || | | ||| |||||||| Sbjct 3368817 TTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAGGGGGATGGTCTTGCCA 3368876 Query 225688 GTCAAAGTTTTTATGAA 225704 ||||| || || | ||| Sbjct 3368877 GTCAAGGTCTTCACGAA 3368893 >seq66 Length=4205697 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| |||||||||||||| |||| ||||| || | || || | ||||| Sbjct 1637505 CAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1637446 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| |||||||| || | || ||||| || ||||| || |||||||| Sbjct 1637445 TTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 1637386 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| || ||| || |||||||| || || || || | ||||| || Sbjct 1637385 TTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1637326 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 1637325 CTTGCCAGTCAGGGTCTTAACGAAGATCTGCATTTT 1637290 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| ||||| || || || |||| ||||| || | || || | ||||| Sbjct 1637733 CAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1637674 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| |||||||| || | || ||||| || || || ||||||||||| Sbjct 1637673 TTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 1637614 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 1637613 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1637554 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | || | |||||| Sbjct 1637553 CTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192115006983866