Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq22 107 3e-18 seq57 102 1e-16 >seq22 Length=8423346 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 6656054 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 6656113 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 6656114 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCC 6656173 Query 46774 AC 46775 || Sbjct 6656174 AC 6656175 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 46319 CTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTT 46378 |||| ||||| |||||||| | || ||||||||||| || ||||| || ||||| || | Sbjct 6654826 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 6654884 Query 46379 TGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||||||| || || |||||||| || ||||| ||||| Sbjct 6654885 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 6654924 >seq57 Length=5062550 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| || || | ||| || Sbjct 2137942 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 2138001 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 2138002 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 2138061 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 2138062 ACCACTCTCTCACC 2138075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712691654748480