Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq66 138 3e-27 seq72 136 9e-27 >seq66 Length=4205697 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || | || ||||| || ||||| ||||||||||| || | | || Sbjct 1637514 CCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 1637455 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||||| |||||||| |||||||||||||| | | || || Sbjct 1637454 ACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 1637395 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| ||||| || || ||||||| |||| | | |||| ||| ||| || || Sbjct 1637394 CTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 1637338 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 ||| || || || ||||| || || ||||| ||||||| ||||||||| |||| Sbjct 1637337 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCATTTTTCCCT 1637285 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||||| || ||||| ||||| || ||||||||||| || | | || Sbjct 1637742 CCTGAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1637683 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||||| |||||||| |||||||||||||| | | ||| || Sbjct 1637682 ACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 1637623 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 1637622 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 1637566 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| || || |||||||| |||| ||||| Sbjct 1637565 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 >seq72 Length=3839329 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || |||||||| |||||||| |||||||| ||||||| | || Sbjct 3368909 CCTGAGGCGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGACAGGGT 3368968 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || ||||| || ||||| |||||||||||||| | | ||| || Sbjct 3368969 GCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCC 3369028 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| || || || Sbjct 3369029 TTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGTTCCACCTC 3369085 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || ||||||||||||| |||||| Sbjct 3369086 CAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| | |||||| ||||||||||| || | | ||| Sbjct 3367769 CCTGAGGCGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGT 3367828 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || || || || ||||| |||||||||||||| | | || || Sbjct 3367829 GCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 3367888 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || || ||| ||| | | |||| ||| ||| || || Sbjct 3367889 CTCCTTGTCCTGGATCTTGGCCTTCACATCCTCAATGGTGTC---ACTGGGCTCAACCTC 3367945 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| || || ||||||||||||| |||||| Sbjct 3367946 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| |||||||| ||||||||||| |||| | ||| | ||| ||| Sbjct 3369147 AGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 3369206 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || || ||||| || Sbjct 3369207 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3369266 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 3369267 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 3369323 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 3369324 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3369361 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| |||||||| ||||||||||| || | | ||| Sbjct 3367997 CCTGAGGCGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 3368056 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | || ||||| || || || || ||||| ||||||||||| || | | || || Sbjct 3368057 GCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 3368116 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || || || |||| | | |||| ||| ||||| || Sbjct 3368117 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAG 3368176 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 | || || ||||| || | ||||||||||||| |||| Sbjct 3368177 GGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || | || || ||||| | |||||| |||||||| ||| ||| | || Sbjct 3368225 CCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGT 3368284 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || ||||| || ||||| ||||||||||| || | | || || Sbjct 3368285 GCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 3368344 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || || || |||| | | |||| ||| ||||| || Sbjct 3368345 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAG 3368404 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 | || || ||||| || | ||||||||||||| |||| Sbjct 3368405 GGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || | || || ||||| | |||||| |||||||| ||| ||| | || Sbjct 3368453 CCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGT 3368512 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || ||||| || ||||| ||||||||||| || | | || || Sbjct 3368513 GCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 3368572 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || || || |||| | | |||| ||| ||||| || Sbjct 3368573 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAG 3368632 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 | || || ||||| || | ||||||||||||| |||| Sbjct 3368633 GGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || | || || ||||| | |||||| |||||||| ||| ||| | || Sbjct 3368681 CCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGACAGGGT 3368740 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || ||||| || ||||| ||||||||||| || | | || || Sbjct 3368741 GCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 3368800 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || || || |||| | | |||| ||| ||||| || Sbjct 3368801 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGCTCGACTTCCAG 3368860 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 | || || ||||| || | ||||||||||||| |||| Sbjct 3368861 GGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153418116901369