Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq66 172 1e-37 seq72 143 6e-29 seq203 114 3e-20 seq24 93.3 9e-14 seq26530 89.7 1e-12 seq35 89.7 1e-12 >seq66 Length=4205697 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || |||| || | ||| |||||| |||||||||||||||| Sbjct 1637519 CCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1637460 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||| || || || ||||| || ||||||| | || |||||| ||| Sbjct 1637459 AGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1637400 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| ||||| || | || || ||||| | ||||| Sbjct 1637399 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 1637340 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| ||||||||||| ||||||||||| Sbjct 1637339 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCATTTT 1637290 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||||| || || || || | || || || |||||||||||||||| Sbjct 1637748 ACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGA 1637689 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || ||||| || ||||||| | || |||||| || Sbjct 1637688 CAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGG 1637629 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| || || || | || || ||||| | ||||| Sbjct 1637628 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1637569 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || || ||||| Sbjct 1637568 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1634326 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1634384 >seq72 Length=3839329 Score = 143 bits (158), Expect = 6e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | || ||||| |||||||||||||||| Sbjct 3367992 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 3368051 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || || |||||||||| | || || || ||| Sbjct 3368052 AGAGTGCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368111 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | || || ||||| || || ||||| Sbjct 3368112 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGC-TCGAC 3368170 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||| || | ||| ||||| || ||||| ||||| ||||| |||||| Sbjct 3368171 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || ||||| || | || ||||| |||||||||||||||| || ||||| Sbjct 3367773 AGGCGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGC 3367832 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || || || || || || || |||||||||| | || |||||| ||||| |||||| Sbjct 3367833 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 3367892 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || || || || ||||| | || || || || ||| Sbjct 3367893 TTGTCCTGGATCTTGGCCTTCACATCCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 3367952 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||| ||||| ||||| |||||||| Sbjct 3367953 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | || ||||| |||||||||||||| | Sbjct 3369132 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3369191 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || || |||||||||| | || || || ||| Sbjct 3369192 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3369251 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | || || ||||| | || || Sbjct 3369252 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3369311 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| ||||| || || |||||||| || Sbjct 3369312 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3369361 Score = 125 bits (138), Expect = 1e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || |||| || | || ||||| |||||||| || | | Sbjct 3368220 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368279 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || ||||| |||||||||| | || || || ||| Sbjct 3368280 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368339 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | || || ||||| || || ||||| Sbjct 3368340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGC-TCGAC 3368398 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||| || | ||| ||||| || ||||| ||||| ||||| |||||| Sbjct 3368399 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 125 bits (138), Expect = 1e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || |||| || | || ||||| |||||||| || | | Sbjct 3368448 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368507 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || ||||| |||||||||| | || || || ||| Sbjct 3368508 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368567 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | || || ||||| || || ||||| Sbjct 3368568 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGC-TCGAC 3368626 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||| || | ||| ||||| || ||||| ||||| ||||| |||||| Sbjct 3368627 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 125 bits (138), Expect = 1e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || |||| || | || ||||| |||||||| || | | Sbjct 3368676 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368735 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || ||||| |||||||||| | || || || ||| Sbjct 3368736 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368795 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | || || ||||| || || ||||| Sbjct 3368796 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACGGGGC-TCGAC 3368854 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||| || | ||| ||||| || ||||| ||||| ||||| |||||| Sbjct 3368855 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 >seq203 Length=1195537 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||| || | || |||| || | ||| ||||| || ||||||| ||| | Sbjct 1141738 ACCACCACAAAGTCCCAGCCCCAGGTGAAGGGTGGATTCTTGTTAGATGTTGCAGTTGGA 1141797 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||| | |||||||| || || ||||| |||||||||| | || || || | || Sbjct 1141798 CAGTGTGTGTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCTGCTGCTGATCCCGAGG 1141857 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || ||||||||||| | ||| | || |||| || |||| ||| | Sbjct 1141858 GATGCCCTCCTTATCCTGGATCTTTGCGTCTACATTTTCTGTAGTATCAGAAGGTTCAGC 1141917 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||| | ||| || || ||||| | ||||| | | | |||||||| Sbjct 1141918 CTTGAGGGCGATGGTTTTCCCCGTGAGGGTCTTCATGGAGATCTGCAT 1141965 >seq24 Length=8342771 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1617849 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1617791 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1621614 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1621672 >seq26530 Length=206 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 146 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 204 >seq35 Length=6671847 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4253390 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4253448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046373888346306