Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq72 161 7e-35 seq66 113 3e-20 seq203 98.7 7e-16 >seq72 Length=3839329 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || |||||||||||| || ||| || |||||||| ||||||| Sbjct 3368904 CCACCCCTGAGGCGCAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCGGAC 3368963 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| |||||||||||||| |||||||||| | |||||| || | ||| Sbjct 3368964 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3369023 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || ||||||| Sbjct 3369024 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACC 3369083 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 3369084 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3369130 Score = 149 bits (164), Expect = 5e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||||||| || || ||| || ||||||||||| || Sbjct 3369128 CATCCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTC 3369187 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || |||| |||| ||||||||||| || |||||||||| | ||||||||||| Sbjct 3369188 GGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 3369247 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | |||||||| || || Sbjct 3369248 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 3369307 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| | || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 3369308 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 3369362 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| || || | || ||||||||| || || ||| || ||||||||||| || | Sbjct 3367764 CCCCCCCTGAGGCGCAGCACCAGGTGCAGAGTCGCCTCTTTCTGGATGTTGTAGTCAGAC 3367823 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| ||||||||||| || |||||||||| | |||||| || | || Sbjct 3367824 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 3367883 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||| || | | |||||||| || || || Sbjct 3367884 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATCCT-CAATGGTGTCACTGGGCTCAAC 3367942 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || || ||||| || || ||||||||||||||||| ||||| Sbjct 3367943 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3367990 Score = 125 bits (138), Expect = 5e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || | ||||||| || || ||| || |||||||| ||| ||| Sbjct 3368220 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368279 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| |||||||||||||| |||||||||| | ||||||||||| || Sbjct 3368280 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368339 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | |||| | |||||||| || || || Sbjct 3368340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACGGGGCTCGAC 3368398 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 |||| | || ||||| || || | ||||||||||||||| ||| Sbjct 3368399 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368444 Score = 125 bits (138), Expect = 5e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || | ||||||| || || ||| || |||||||| ||| ||| Sbjct 3368448 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368507 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| |||||||||||||| |||||||||| | ||||||||||| || Sbjct 3368508 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368567 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | |||| | |||||||| || || || Sbjct 3368568 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACGGGGCTCGAC 3368626 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 |||| | || ||||| || || | ||||||||||||||| ||| Sbjct 3368627 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368672 Score = 125 bits (138), Expect = 5e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || | ||||||| || || ||| || |||||||| ||| ||| Sbjct 3368676 CCACCCCTGAGGCGCAGCGCCAGGTGCAGAGTCGCCTCTTTCTGGATGTTATAAACGGAC 3368735 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| |||||||||||||| |||||||||| | ||||||||||| || Sbjct 3368736 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3368795 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | |||| | |||||||| || || || Sbjct 3368796 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACGGGGCTCGAC 3368854 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 |||| | || ||||| || || | ||||||||||||||| ||| Sbjct 3368855 TTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368900 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||||||||| || || ||| || ||||||||||| || Sbjct 3367988 CATCCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTC 3368047 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || |||||||||| | ||||||||||| Sbjct 3368048 AGACAGAGTGCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 3368107 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 3368108 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACGGGGCT 3368166 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 | || |||| | || ||||| || || | ||||||||||||||| ||| Sbjct 3368167 CGACTTCCAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGC 3368216 >seq66 Length=4205697 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || || ||||| || || |||||| ||||||||||| || | Sbjct 1637747 CCACCCCTGAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAC 1637688 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||||||||||||| || ||||||| | |||||| || | ||| Sbjct 1637687 AGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 1637628 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| || || ||| Sbjct 1637627 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 1637568 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || ||||||||||| ||||||||||| Sbjct 1637567 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1637521 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || || || | || ||||| ||| || ||| || || ||||||||||| Sbjct 1637526 TTGCATCCCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTA 1637467 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || || | || |||||||||||||| || ||||||| | |||||| || Sbjct 1637466 GTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTC 1637407 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| || ||||| |||| | ||| | |||||||| || Sbjct 1637406 AGGGGGAATGCCCTCCTTGTCTTGGATCTT-GGCTTTGACATTCTCAATGGTGTCACTGG 1637348 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 1637347 GCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATCTGCAT 1637293 >seq203 Length=1195537 Score = 98.7 bits (108), Expect = 7e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| || | |||||||||| ||| || | || ||||||| | | || ||| | | Sbjct 1141748 AGTCCCAGCCCCAGGTGAAGGGTGGATTCTTGTTAGATGTTGCAGTTGGACAGTGTGTGT 1141807 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||||||||||||| |||||||||| |||||||||| ||| | || ||| Sbjct 1141808 CCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCTGCTGCTGATCCCGAGGGATGCCCTCC 1141867 Query 44240 TTTTCCGTTATCTTCTGCTTC-AATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || ||| ||||| ||| || | || || | || || | | ||| ||| | | Sbjct 1141868 TTATCCTGGATCTT-TGCGTCTACATTTTCTGTAGTATCAGAAGGTTCAGCCTTGAGGGC 1141926 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || |||||||||||||||| | |||| |||||| || Sbjct 1141927 GATGGTTTTCCCCGTGAGGGTCTTCATGGAGATCTGCATGGTG 1141969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359870892074463