Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq61 188 1e-42 seq33 104 3e-17 >seq61 Length=4751131 Score = 188 bits (208), Expect = 1e-42 Identities = 220/297 (74%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 4588993 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 4589052 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| | || ||||| | || |||||||||||||||||||||||| | || | Sbjct 4589053 TGTTGATGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGAG 4589112 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || |||||||| || ||||||| ||| | ||| Sbjct 4589113 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 4589172 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| || |||||||| ||||||| | || | ||||||||||| Sbjct 4589173 TCTCCCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 4589232 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| |||||| || || || || || || || ||||| |||||||||| Sbjct 4589233 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 4589289 Score = 134 bits (148), Expect = 2e-26 Identities = 182/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || | ||||||||| || |||||||| ||| || || || Sbjct 4590908 TCACCGATGAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 4590967 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || || || ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 4590968 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 4591027 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||||| || ||||| || || |||| || || || | | |||| || || ||| Sbjct 4591028 ATGAGCCCCGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCAGGC 4591087 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||| || || | ||| | |||| ||| |||| || || |||||||| Sbjct 4591088 ACATGGGGTGGGTACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATTTCT 4591147 Query 9472 CCGTCAATCATCTG 9485 || || |||||||| Sbjct 4591148 CCATCGATCATCTG 4591161 >seq33 Length=6734157 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | |||| ||| ||| |||||| || || || || | | ||| Sbjct 1588809 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACAAGCTTCTCCAGGGATGCCG 1588868 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || |||| || || || ||||| ||||||||| | |||| Sbjct 1588869 TCTTCACGATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1588928 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| || | | || || || ||||| || ||||| || | ||| | |||| Sbjct 1588929 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1588988 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| | ||||| |||| || |||| || || || | ||| | ||||| Sbjct 1588989 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1589048 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 1589049 GAGCATCAATGTCTCCATACAG 1589070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716632712410560