Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq52800 114 2e-20 seq833 114 2e-20 seq76856 102 1e-16 seq15833 91.5 2e-13 >seq52800 Length=5892 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 504 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 445 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 444 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 385 Query 24277 C 24277 | Sbjct 384 C 384 >seq833 Length=14924 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 5287 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5346 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 5347 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5406 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 5407 CAACCACTCTCTCACC 5422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 || |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| Sbjct 10080 AAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAG 10139 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 |||||||| |||| | | || || ||||||| Sbjct 10140 TATTTTTCATCTGCTTTCAGCTTGTTCCAAT 10170 >seq76856 Length=2926 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || ||| |||||||| || || ||||| | |||||| |||||||| ||||| |||||| Sbjct 1653 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 1712 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | ||| || || |||||||||||| Sbjct 1713 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTCT 1766 >seq15833 Length=18383 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 9657 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 9716 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 9717 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 9775 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 9776 CTCCAGGTAGATGGCAAAAGCCCCAGG 9802 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || ||||||| || || || |||||||| || || || || ||||||| Sbjct 5976 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 6035 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || |||| || || | || || || | || ||||| || | Sbjct 6036 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCAAAGGGGT 6095 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | | || || || ||||| | || || |||||||| || || || | ||| | Sbjct 6096 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 6155 Query 53568 TCTTATTAGAGATTTCAGC 53586 | || ||| |||||| Sbjct 6156 GTCTGTTGGAGCGTTCAGC 6174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591068072631600