Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq54521 149 8e-31 seq83008 111 2e-19 >seq54521 Length=2363 Score = 149 bits (164), Expect = 8e-31 Identities = 198/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||||| || | | |||||||||||||||||||| | |||||||||||| Sbjct 1040 GGGCACGCCGTCAGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 1099 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 1100 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 1159 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| |||||| ||||||| ||| || || || || | ||||| ||||| Sbjct 1160 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAACAGGGGGTGCGCGTTCTTCCCGTTCACCTC 1219 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||| | || || || |||| | | ||||| || ||||| ||||||| ||| Sbjct 1220 GCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCGGGACGAACGTGCTCCAG 1279 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| |||||| | ||| || ||||||| Sbjct 1280 CGAGAGCAGGATCTCCTCGTTCGTAGCATTTTCCT 1314 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || || || |||||| || | || || Sbjct 1429 CCTGGTGCCCGAACTGGTTGCAGGGGAAGCCGAGGACCTGCAGCCCGCGGGGGCCGTAGC 1488 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||| | ||| | | || ||| ||| | |||||||| ||||| | Sbjct 1489 GCCGCTGCAGCTCGTTGAGCTGCAGGAAGTCGCGGGTGGTGGTGCCTCAGAGCGACGCCA 1548 Query 83511 CGTT 83514 |||| Sbjct 1549 CGTT 1552 >seq83008 Length=3887 Score = 111 bits (122), Expect = 2e-19 Identities = 214/303 (71%), Gaps = 16/303 (5%) Strand=Plus/Minus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || ||| || |||| ||||||| | || | || Sbjct 1693 CTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGCCGGAAAGGT 1636 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || |||| |||||||| ||||||||| |||||||||| | ||| ||| | || Sbjct 1635 TCCCCTTCAGGACCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCAGAGCGCCGTACC 1576 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT-CATGTCGTCGCTAGGCGC 83241 || |||| | | || |||| ||| || || || | | ||||| ||||| Sbjct 1575 GGGCTCCAGACGACGAAACGGGGCTCGGCCATCAGA-TGTTGCGCCTCGTCAGCCGGCGC 1517 Query 83242 CGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACC 83296 |||||| |||| || ||| ||||||||| || || || ||| || ||||| ||| Sbjct 1516 GGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC-CCGTTCACC 1462 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | |||||||| |||||| | ||||| ||||||||||| ||| || || ||||||||| Sbjct 1461 TGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCTGGCCGCACGTGCTTC 1402 Query 83357 AGG 83359 ||| Sbjct 1401 AGG 1399 Score = 109 bits (120), Expect = 7e-19 Identities = 119/156 (76%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 1271 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGA--TA 1214 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | ||||||||||| | Sbjct 1213 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGGGATG 1155 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | ||||| |||||||| | || |||||||| |||| Sbjct 1154 CCACGTTTTCGATGAGGACCACGCGGCCCCGGAAGA 1119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606075896851800