Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq329963 363 5e-96 seq329097 340 5e-89 >seq329963 Length=346 Score = 363 bits (402), Expect = 5e-96 Identities = 289/346 (84%), Gaps = 1/346 (0%) Strand=Plus/Minus Query 6639 TTCCGTTCCTTCAAGGCAGTGAAGGAGAAACTGGATACGCGTCGAGGCTCTAACTCTGAG 6698 |||||||||||||| || || |||||||| |||||||| ||||| |||||||| || ||| Sbjct 346 TTCCGTTCCTTCAAAGCCGTCAAGGAGAAGCTGGATACCCGTCGTGGCTCTAATTCCGAG 287 Query 6699 CTGGAAACCGCCCTGAAAGACCTGGGCAAGGCAGTTTCCTACAAGGGGATGTATGGCGAT 6758 ||||| || || |||||||||||||||| || || ||||| |||||||||||||||||| Sbjct 286 CTGGAGACAGCGGTGAAAGACCTGGGCAAAGCGGTGTCCTATAAGGGGATGTATGGCGAT 227 Query 6759 GTGGCCATCGTGGTCTACTCCGGCCAGTACATCGAAAACGACGTCAAAAAGAACTATCTG 6818 ||||||||||| || || ||||| |||||| | ||||||| |||||||||||||| ||| Sbjct 226 GTGGCCATCGTCGTGTATTCCGGACAGTACGTGGAAAACGGCGTCAAAAAGAACTTCCTG 167 Query 6819 CCAGACCTGACGATGGTCCTGGGTAACACTCAGGCGCGCGGCCTGCGTACCTATGGTTGC 6878 || ||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct 166 CCGGACAACACGATGGTGCTGGGGAACACTCAGGCACGCGGTCTGCGCACCTATGGCTGC 107 Query 6879 ATTCTTGATGCCGATGCCCAGCGAGAAGGTATCAACGCTTCGACGCGTTACCCG-AAAAA 6937 |||| ||||| | || ||||| ||||| || | || || | ||||||||| ||| | Sbjct 106 ATTCAGGATGCGGCCGCACAGCGCGAAGGCATTCAGGCCTCTGCCCGTTACCCGCAAACA 47 Query 6938 CTGGGTGCAAACGGGCGATCCGGCGCGTGAATTCACCATGATTCAG 6983 ||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 46 CTGGGTGACCACCGGCGATCCGGCGCGTGAGTTCACCATGATTCAG 1 >seq329097 Length=330 Score = 340 bits (376), Expect = 5e-89 Identities = 276/329 (84%), Gaps = 4/329 (1%) Strand=Plus/Minus Query 4033 GGTCGAATGGCAATTGACGGTCTGAAAGAGGTGCAGGAAGCCGTCATGCTAATCGAAGCA 4092 ||||| ||||| || || ||||||||||| || |||||||| || ||||| || ||||| Sbjct 329 GGTCGTATGGCCATCGATGGTCTGAAAGAAGTTCAGGAAGCGGTGATGCTGATAGAAGCC 270 Query 4093 GGTCTCAGTACGTATGAGAAAGAGTGCGCCAAACGCGGTGATGATTATCAGGAGATTTTT 4152 || || ||||| || |||||||||||||| ||||||||||| || |||||||| |||||| Sbjct 269 GGACTGAGTACCTACGAGAAAGAGTGCGCAAAACGCGGTGACGACTATCAGGAAATTTTT 210 Query 4153 GCCCAGCAGGTCCGGGAATCAATGGAGCGTCGTGCTGCGGGTCTGAACCCACCGGCATGG 4212 |||||||||||||| ||| | |||||||| ||||| || ||||| || || || || ||| Sbjct 209 GCCCAGCAGGTCCGTGAAACGATGGAGCGCCGTGCAGCCGGTCTTAAACCGCCCGCCTGG 150 Query 4213 GCCGCTGCCGCTTTTGAGGCTGGAGTGAAAAAATCAAACGAGGAGGAGCAAGA-TGGC-G 4270 || ||||| || ||||| | || || | |||||| ||||||||| |||| || | | Sbjct 149 GCGGCTGCAGCATTTGAATCCGGGCTGCGACAATCAACAGAGGAGGAG-AAGAGTGACAG 91 Query 4271 CACGAGCTGCGTAATCTTCCGCATATTGCCAGTATGGCCTTTAATGAGCCACTGATGCTT 4330 || |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 90 CA-GAGCTGCGTAATCTCCCGCATATTGCCAGCATGGCCTTTAATGAGCCGCTGATGCTT 32 Query 4331 GAACCCGCCTACGCGCGGGTTTTCTTTTG 4359 | ||||||||| ||||||||||||||||| Sbjct 31 GCACCCGCCTATGCGCGGGTTTTCTTTTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147648832618730